View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_48 (Length: 373)

Name: NF10092A_low_48
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_48
NF10092A_low_48
[»] chr5 (1 HSPs)
chr5 (6-360)||(32472717-32473071)


Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 6 - 360
Target Start/End: Complemental strand, 32473071 - 32472717
Alignment:
Q  6 acaatctaccccaacacaccttccatcatctacaacgacaccgttttcacatggtctcaaacccacaaacgatgcctccaacttgcctccgccatcacct 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32473071 acaatctaccccaacacaccttccatcatctacaacgacaccgttttcacatggtctcaaacccacaaacgatgcctccaacttgcctccgccatcacct 32472972  T
Q  106 ccttaggtatccgccgcggcaacgtcgtctccgtcatcgctcccaacatccccgccatgtatgaactccacttcgccgttcccttcaccggagctatcct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32472971 ccttaggtatccgccgcggcaacgtcgtctccgtcatcgctcccaacatccccgccatgtatgaactccacttcgccgtccccttcaccggagctatcct 32472872  T
Q  206 taacaacatcaacacgcgccttgacgcgcgtatcatctccaacatcctcctccactgcgaatccaaactcgttttcgtagatatcgccgcacgtgatctt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32472871 taacaacatcaacacgcgccttgacgcgcgtatcatctccaacatcctcctccactgcgaatccaaactcgttttcgtggatatcgccgcacgtgatctt 32472772  T
Q  306 gttctccaagctttatccttattcccttcaaaacaacataaacctctccttattc 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32472771 gttctccaagctttatccttattcccttcaaaacaacataaacctctccttattc 32472717  T

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