View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_48 (Length: 373)
Name: NF10092A_low_48
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 6 - 360
Target Start/End: Complemental strand, 32473071 - 32472717
Alignment:
| Q |
6 |
acaatctaccccaacacaccttccatcatctacaacgacaccgttttcacatggtctcaaacccacaaacgatgcctccaacttgcctccgccatcacct |
105 |
Q |
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| T |
32473071 |
acaatctaccccaacacaccttccatcatctacaacgacaccgttttcacatggtctcaaacccacaaacgatgcctccaacttgcctccgccatcacct |
32472972 |
T |
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| Q |
106 |
ccttaggtatccgccgcggcaacgtcgtctccgtcatcgctcccaacatccccgccatgtatgaactccacttcgccgttcccttcaccggagctatcct |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32472971 |
ccttaggtatccgccgcggcaacgtcgtctccgtcatcgctcccaacatccccgccatgtatgaactccacttcgccgtccccttcaccggagctatcct |
32472872 |
T |
|
| Q |
206 |
taacaacatcaacacgcgccttgacgcgcgtatcatctccaacatcctcctccactgcgaatccaaactcgttttcgtagatatcgccgcacgtgatctt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32472871 |
taacaacatcaacacgcgccttgacgcgcgtatcatctccaacatcctcctccactgcgaatccaaactcgttttcgtggatatcgccgcacgtgatctt |
32472772 |
T |
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| Q |
306 |
gttctccaagctttatccttattcccttcaaaacaacataaacctctccttattc |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32472771 |
gttctccaagctttatccttattcccttcaaaacaacataaacctctccttattc |
32472717 |
T |
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