View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_50 (Length: 370)
Name: NF10092A_low_50
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 349
Target Start/End: Original strand, 42723516 - 42723852
Alignment:
| Q |
10 |
aaaaatattgaatatgagagaatgatcatgaattagaaatgtatacaagagattataatgtnnnnnnnnnncctgcatggtatgacaagggatgatgatg |
109 |
Q |
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| T |
42723516 |
aaaaatattgaatatgagagaatgatcatgaattagaaatgtatacaagagattataatgtaaaaaaa---cctgcatggtatgacaagggatgatgatg |
42723612 |
T |
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| Q |
110 |
agtaggataaggatgcgcaggatagagttctctggaccaccccataggaacattgccgtgagtactactactagagatggatctactaacatgagccggt |
209 |
Q |
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| T |
42723613 |
agtaggataaggatgcgcaggatagagttctctggaccaccccataggaacattgccgtgagtactactactagagatggatctgctaacatgagccggt |
42723712 |
T |
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| Q |
210 |
ggagtagagttactaccatggcggcgcctccatgagataaacaacctttgaggatgtatacggtgtctttgaaacaaaacaacatcaccagcatcaagac |
309 |
Q |
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| T |
42723713 |
ggagtagagttactaccatggcggcgcctccatgagataaacaacctttgaggatgtatacggtgtctttgaaacaaaacaacatcaccagcatcaagac |
42723812 |
T |
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| Q |
310 |
gtttatctttaacataacgactccaaccttttgtaagaac |
349 |
Q |
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| T |
42723813 |
gtttatctttaacataacgactccaaccttttgtaagaac |
42723852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 25691088 - 25691020
Alignment:
| Q |
281 |
aaacaaaacaacatcaccagcatcaagacgtttatctttaacataacgactccaaccttttgtaagaac |
349 |
Q |
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| T |
25691088 |
aaacagaacgacatcgccagcatcgagtcgtttatctttgacataacgactccaaccttttgttagaac |
25691020 |
T |
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