View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_52 (Length: 370)
Name: NF10092A_low_52
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 122 - 350
Target Start/End: Original strand, 28619118 - 28619346
Alignment:
| Q |
122 |
atggaaataagtatggactaaatataaaatggatggagatgatctccttggagaaatgaaaatggtcacctcagtaagagtgcctcctttactgagatag |
221 |
Q |
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| T |
28619118 |
atggaaataagtatggactaaatataaaatggatggagatgatctccttggagaaatgaaaatggtcacctcagtaagagtgcctcctttactgagatag |
28619217 |
T |
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| Q |
222 |
ggataattatacacccagcgaccaaaatttccactatacggatcagataccctttgtgttctgttacactcctctaaatacctcctctttgtctctctgt |
321 |
Q |
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| T |
28619218 |
ggataattatacacccagcgaccaaaatttccactaaacggatcagataccctttgtgttctgttacactcctctaaatacctcctctttgtctctctgt |
28619317 |
T |
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| Q |
322 |
taatgatttcctcacctttctccaattct |
350 |
Q |
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| T |
28619318 |
taatgatttcctcacctttctccaattct |
28619346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 28617931 - 28617803
Alignment:
| Q |
2 |
cacaagggaagagaatgcaataaagaaagacgtttgaacaaagacagaagctgacctattatcaaacaagataaggagagtaaataaagtagtgtgtgaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28617931 |
cacaagggaagagaatgcaataaagaaagacgtttgaacaaagacagaagctgacctattatcaaacaagataaggagagtaaataaagtagtgtgtgaa |
28617832 |
T |
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| Q |
102 |
tgtgcaatatggagatagagatggaaata |
130 |
Q |
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| T |
28617831 |
tgtgcaatatggagatagagatggaaata |
28617803 |
T |
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