View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_53 (Length: 369)

Name: NF10092A_low_53
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_53
NF10092A_low_53
[»] chr2 (12 HSPs)
chr2 (171-354)||(16551778-16551959)
chr2 (7-63)||(16551614-16551670)
chr2 (171-273)||(41809183-41809285)
chr2 (174-262)||(5452367-5452454)
chr2 (206-273)||(1647266-1647333)
chr2 (198-273)||(11063518-11063593)
chr2 (172-238)||(29430823-29430889)
chr2 (216-273)||(28677642-28677699)
chr2 (204-273)||(41817198-41817267)
chr2 (212-273)||(43065429-43065490)
chr2 (186-238)||(5902502-5902554)
chr2 (187-235)||(16552510-16552558)
[»] chr3 (12 HSPs)
chr3 (175-273)||(43115086-43115184)
chr3 (211-275)||(11039317-11039381)
chr3 (273-317)||(34318012-34318056)
chr3 (199-274)||(26330289-26330364)
chr3 (186-273)||(42745068-42745155)
chr3 (182-268)||(27290850-27290936)
chr3 (277-319)||(27291005-27291047)
chr3 (172-273)||(27792902-27793003)
chr3 (186-271)||(37273166-37273251)
chr3 (279-347)||(41159005-41159071)
chr3 (275-323)||(41028955-41029003)
chr3 (187-247)||(45541627-45541687)
[»] chr4 (10 HSPs)
chr4 (188-273)||(1137742-1137827)
chr4 (174-273)||(28232575-28232674)
chr4 (172-270)||(3176043-3176141)
chr4 (172-235)||(18628492-18628555)
chr4 (172-273)||(33534108-33534209)
chr4 (190-264)||(27721756-27721830)
chr4 (276-317)||(4663801-4663842)
chr4 (172-273)||(21157798-21157899)
chr4 (189-273)||(19394719-19394803)
chr4 (186-222)||(29778884-29778920)
[»] chr8 (10 HSPs)
chr8 (174-238)||(39881662-39881726)
chr8 (175-273)||(6950352-6950450)
chr8 (172-264)||(11569396-11569488)
chr8 (186-270)||(14949899-14949983)
chr8 (273-348)||(8629002-8629077)
chr8 (175-270)||(30191083-30191178)
chr8 (172-238)||(4560567-4560633)
chr8 (172-273)||(7918385-7918486)
chr8 (216-273)||(10383915-10383972)
chr8 (212-273)||(30918143-30918203)
[»] chr6 (13 HSPs)
chr6 (172-238)||(2455875-2455941)
chr6 (180-273)||(30863276-30863369)
chr6 (206-273)||(7931699-7931766)
chr6 (180-275)||(32171330-32171425)
chr6 (172-270)||(34939777-34939875)
chr6 (176-247)||(769194-769265)
chr6 (210-273)||(31420975-31421038)
chr6 (211-273)||(9027608-9027670)
chr6 (172-273)||(8420136-8420237)
chr6 (175-219)||(4331014-4331058)
chr6 (229-273)||(6536977-6537021)
chr6 (179-247)||(8147012-8147080)
chr6 (175-247)||(27857414-27857486)
[»] chr1 (12 HSPs)
chr1 (171-273)||(37241759-37241862)
chr1 (175-237)||(14559038-14559100)
chr1 (206-273)||(11639389-11639456)
chr1 (216-271)||(31118075-31118130)
chr1 (275-317)||(4202233-4202275)
chr1 (172-238)||(4757403-4757469)
chr1 (186-268)||(17420238-17420320)
chr1 (171-273)||(44422729-44422831)
chr1 (172-273)||(3110021-3110122)
chr1 (189-273)||(6262050-6262134)
chr1 (172-208)||(35017677-35017713)
chr1 (172-208)||(48748534-48748570)
[»] chr5 (12 HSPs)
chr5 (172-247)||(11457154-11457229)
chr5 (172-271)||(38728434-38728533)
chr5 (192-249)||(2568712-2568769)
chr5 (178-273)||(6109513-6109608)
chr5 (175-238)||(7856605-7856667)
chr5 (190-264)||(13264062-13264136)
chr5 (199-273)||(35095752-35095826)
chr5 (189-238)||(3977373-3977422)
chr5 (204-273)||(35963271-35963340)
chr5 (186-270)||(1899187-1899270)
chr5 (193-273)||(37611175-37611255)
chr5 (193-273)||(37787905-37787985)
[»] chr7 (7 HSPs)
chr7 (172-270)||(33894660-33894758)
chr7 (172-273)||(34754749-34754850)
chr7 (179-263)||(39566153-39566237)
chr7 (186-273)||(20553133-20553220)
chr7 (174-265)||(36598297-36598388)
chr7 (223-273)||(26935547-26935597)
chr7 (212-273)||(46082066-46082127)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 171 - 354
Target Start/End: Original strand, 16551778 - 16551959
Alignment:
Q  171 aagcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16551778 aagcttatctattgacataaacacttgcgagattgtttagaagagcttatggaaagatcttatgacatatacataagttgtattcagcttatttccataa 16551877  T
Q  271 gctattttgttatagaaataccttatacttgagcacttatacgataaccatttttaattaagatggttatccaaacaaggccat 354  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||    
T  16551878 gctattttgttatagaaacaccttataattgagcacttatacgataacca--tttaattaagatgtttatccaaacaaggccat 16551959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 16551614 - 16551670
Alignment:
Q  7 agttgatggtgctgaatgttctggttttattgcatttagttgtgatctattgaagta 63  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  16551614 agttgatggtgctgaatgttctggttttattgcatttagttctgatttattgaagta 16551670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 273
Target Start/End: Original strand, 41809183 - 41809285
Alignment:
Q  171 aagcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 270  Q
    |||||||| | ||| |||||||||||| |||| || ||  |||||||| || ||| | |||||||||| | |||||||||| |  |||||||||||||||    
T  41809183 aagcttatttgttggcataaacacttgtgagactgattgtaagagcttgtggaaacaacttatgacatgttcataagttgtttttagcttatttccataa 41809282  T
Q  271 gct 273  Q
    |||    
T  41809283 gct 41809285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 5452454 - 5452367
Alignment:
Q  174 cttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttat 262  Q
    ||||||||||||||||  |||||| |||| ||||| |||||| ||||  ||| | |||||||||| |||||||| ||||| ||||||||    
T  5452454 cttatctattgacatattcacttg-gagactgtttggaagagattatagaaaaaacttatgacatgtacataagctgtattcagcttat 5452367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 1647333 - 1647266
Alignment:
Q  206 tttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||||||| |||||||||| | ||||||||||   |||||| ||| | |||||||||||||||||||    
T  1647333 tttagaagaacttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataagct 1647266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 11063593 - 11063518
Alignment:
Q  198 cgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||| ||||| |||||||||||| ||| || ||||||||| | |||||||||| |  ||||||||| ||||||||    
T  11063593 cgagactgtttggaagagcttatggaaacatattatgacatgtccataagttgtttttagcttattttcataagct 11063518  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 29430889 - 29430823
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    |||||||||| ||||||||||||||| | || | ||| ||||| |||||||||| | ||||||||||    
T  29430889 agcttatctactgacataaacacttgtgggactatttggaagaacttatgaaaatagcttatgacat 29430823  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 28677642 - 28677699
Alignment:
Q  216 cttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    |||||||||| | |||||||||| | |||||||||| | | |||||||||||||||||    
T  28677642 cttatgaaaacagcttatgacattttcataagttgttttcggcttatttccataagct 28677699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 41817267 - 41817198
Alignment:
Q  204 tgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||||| |||  ||||||||| |||||||||||| |  |||| |||| | |||||||||||||||||||    
T  41817267 tgtttaggagaatttatgaaaacatcttatgacatgttgataatttgttttcagcttatttccataagct 41817198  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 43065429 - 43065490
Alignment:
Q  212 agagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    |||||||||||||| | |||||||||| | ||||| |||| | ||||||||||| |||||||    
T  43065429 agagcttatgaaaacaacttatgacatgtccataaattgttttcagcttatttcaataagct 43065490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 5902502 - 5902554
Alignment:
Q  186 cataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    |||||||||||| |||| ||||| ||||| |||||||||| | ||||||||||    
T  5902502 cataaacacttgtgagactgtttggaagaacttatgaaaacagcttatgacat 5902554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 16552510 - 16552558
Alignment:
Q  187 ataaacacttgcgagattgtttagaagagcttatgaaaagatcttatga 235  Q
    ||||||||||| ||||||||||   ||| ||||||||||||||||||||    
T  16552510 ataaacacttgtgagattgtttgttagatcttatgaaaagatcttatga 16552558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 43115184 - 43115086
Alignment:
Q  175 ttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    |||||||||||||||| |||||| |||||||||| |||||| ||||| ||| | |||||||||| | ||||| |||| | |||||||||||||||||||    
T  43115184 ttatctattgacataatcacttgtgagattgtttggaagagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataagct 43115086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 11039317 - 11039381
Alignment:
Q  211 aagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagctat 275  Q
    ||||||||||| ||| || ||||||||| | |||||||||| | |||||||| ||||||||||||    
T  11039317 aagagcttatggaaacatattatgacatgtccataagttgttttcagcttatctccataagctat 11039381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 34318056 - 34318012
Alignment:
Q  273 tattttgttatagaaataccttatacttgagcacttatacgataa 317  Q
    |||||||||||||||||| |||||||||||||||| |||| ||||    
T  34318056 tattttgttatagaaatagcttatacttgagcactgataccataa 34318012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 274
Target Start/End: Original strand, 26330289 - 26330364
Alignment:
Q  199 gagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagcta 274  Q
    |||| |||||||||||||||||||||| | ||| |||||| | |||| ||| | | ||| ||||||||||||||||    
T  26330289 gagactgtttagaagagcttatgaaaacaacttctgacatgttcataggttcttttcaggttatttccataagcta 26330364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 42745155 - 42745068
Alignment:
Q  186 cataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||| |||||| || ||| |||||||||  ||||| ||| | |||||||||| | |||||||||| | || ||||||||||||||||    
T  42745155 cataagcacttgtgatattatttagaagaatttatgtaaacaacttatgacatgttcataagttgttttcatcttatttccataagct 42745068  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 27290850 - 27290936
Alignment:
Q  182 ttgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccat 268  Q
    ||||||| |||| ||| |||  ||||| |||||||||||||||| | ||||||||||   |||||| ||| | ||||||||||||||    
T  27290850 ttgacatcaacaattgtgaggctgtttcgaagagcttatgaaaacagcttatgacatgcccataagctgttttcagcttatttccat 27290936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 319
Target Start/End: Original strand, 27291005 - 27291047
Alignment:
Q  277 ttgttatagaaataccttatacttgagcacttatacgataacc 319  Q
    |||||||||||||||||||||| | |||||||||| |||||||    
T  27291005 ttgttatagaaataccttatacctaagcacttatatgataacc 27291047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 273
Target Start/End: Complemental strand, 27793003 - 27792902
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataag 271  Q
    |||||||||||||||||||||||  | |||| |||||   |||| ||||| ||| | ||| ||||| ||  ||||||||| | ||||||||||| |||||    
T  27793003 agcttatctattgacataaacacacgtgagactgtttgatagagtttatggaaatagcttttgacaaatttataagttgttttcagcttatttctataag 27792904  T
Q  272 ct 273  Q
    ||    
T  27792903 ct 27792902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 271
Target Start/End: Complemental strand, 37273251 - 37273166
Alignment:
Q  186 cataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataag 271  Q
    ||||| |||| | |||| ||||| | |||||||||| ||| | |||||||||| | |||||||||| | || ||||||||||||||    
T  37273251 cataagcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataag 37273166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 41159071 - 41159005
Alignment:
Q  279 gttatagaaataccttatacttgagcacttatacgataaccatttttaattaagatggttatccaaaca 347  Q
    ||||||| |||| ||||||| | |||||||||||||||| |   |||||||||| ||||||||||||||    
T  41159071 gttataggaataacttatacataagcacttatacgataagc--gtttaattaagttggttatccaaaca 41159005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 41028955 - 41029003
Alignment:
Q  275 ttttgttatagaaataccttatacttgagcacttatacgataaccattt 323  Q
    |||||||||||||||| ||||||| | |||||||||| ||||| |||||    
T  41028955 ttttgttatagaaatagcttatacataagcacttatatgataagcattt 41029003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 45541687 - 45541627
Alignment:
Q  187 ataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataag 247  Q
    |||||||||||  ||| ||||||||||| |||||||||| | |||||||||| | ||||||    
T  45541687 ataaacacttgtaagactgtttagaagaacttatgaaaacagcttatgacatgttcataag 45541627  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 188 - 273
Target Start/End: Complemental strand, 1137827 - 1137742
Alignment:
Q  188 taaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    |||||||||| || | ||||||| ||| |||||||||| |||||||||||| | |||||||||| | ||| |||||||||||||||    
T  1137827 taaacacttgtgacactgtttaggagaacttatgaaaacatcttatgacatgttcataagttgttttcagtttatttccataagct 1137742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 273
Target Start/End: Complemental strand, 28232674 - 28232575
Alignment:
Q  174 cttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||||||||||||| | ||||||||||| ||||| ||||||||| || ||| | |||||||| |||  ||||||||| | || |||||||||| |||||    
T  28232674 cttatctattgacatgagcacttgcgagactgtttggaagagcttgtggaaacaacttatgacttatttataagttgttttcatcttatttccacaagct 28232575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 3176043 - 3176141
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 270  Q
    ||||||| | ||| || ||||||||| || | ||||||| |||||||||||||| |||||||| ||| |  ||||||||| | ||||||||||||||||    
T  3176043 agcttatatgttggcacaaacacttgtgaaactgtttaggagagcttatgaaaacatcttatgtcatgtctataagttgttttcagcttatttccataa 3176141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 18628492 - 18628555
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatga 235  Q
    |||||||||| ||||||||||||||| |||| ||||| | |||||||||||||| | |||||||    
T  18628492 agcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 33534108 - 33534209
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataag 271  Q
    |||||||||| ||||||||  ||||| |||| | |||   |||||||||||||| |  || |||||||| |||||||||| | |||||||||| ||||||    
T  33534108 agcttatctagtgacataagtacttgtgagagtatttgagagagcttatgaaaacaaattgtgacatatccataagttgttttcagcttattttcataag 33534207  T
Q  272 ct 273  Q
    ||    
T  33534208 ct 33534209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 27721830 - 27721756
Alignment:
Q  190 aacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttattt 264  Q
    |||||||| |||||||||||  ||||||||| ||||   |||||||||||| |||||| ||| | ||||||||||    
T  27721830 aacacttgtgagattgtttaagagagcttataaaaactacttatgacatatccataagctgttttcagcttattt 27721756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 4663801 - 4663842
Alignment:
Q  276 tttgttatagaaataccttatacttgagcacttatacgataa 317  Q
    ||||||||||||||| ||||||| | ||||||||||||||||    
T  4663801 tttgttatagaaataacttatacataagcacttatacgataa 4663842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 273
Target Start/End: Complemental strand, 21157899 - 21157798
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataag 271  Q
    |||| ||||| |||||||| ||||||  ||| ||||| ||||||||||   ||| | |||||||||| |||| ||| ||| |  ||||||||||||||||    
T  21157899 agctcatctactgacataagcacttgtaagactgtttggaagagcttacagaaacagcttatgacatttacaaaagctgtttttagcttatttccataag 21157800  T
Q  272 ct 273  Q
    ||    
T  21157799 ct 21157798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 19394719 - 19394803
Alignment:
Q  189 aaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||||||| |||| |||||   |||||||||  ||| | ||||| |||| |||||||| || || |||||||||||||||||||    
T  19394719 aaacacttgtgagactgtttgccagagcttatagaaacaacttattacatgtacataagctgaatacagcttatttccataagct 19394803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 29778920 - 29778884
Alignment:
Q  186 cataaacacttgcgagattgtttagaagagcttatga 222  Q
    |||||||||||| |||||||||||||| |||||||||    
T  29778920 cataaacacttgtgagattgtttagaaaagcttatga 29778884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 39881662 - 39881726
Alignment:
Q  174 cttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||| |||||| | ||||||||||    
T  39881662 cttatctattggcataaacacttgtgagattgtttggaagagcttgtgaaaatagcttatgacat 39881726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 6950450 - 6950352
Alignment:
Q  175 ttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||||| || |||||||| ||| |||||||||| | |||||||||| ||| | | |||||||| |  ||||||||| | |||||||||||||||||||    
T  6950450 ttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttcagcttatttccataagct 6950352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 11569396 - 11569488
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttattt 264  Q
    |||||||||  || ||||| |||||| |||| ||||||  |||||||||| ||| | |||||||||| |||||||||||| | ||||||||||    
T  11569396 agcttatctgctggcataaccacttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattt 11569488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 14949983 - 14949899
Alignment:
Q  186 cataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 270  Q
    |||||||| ||| |||| ||||||| |||||||||||||| | |||||||||| | |||||| ||| | ||||||||||| ||||    
T  14949983 cataaacatttgtgagactgtttaggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttatttctataa 14949899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 8629077 - 8629002
Alignment:
Q  273 tattttgttatagaaataccttatacttgagcacttatacgataaccatttttaattaagatggttatccaaacaa 348  Q
    |||||||||||||||||| ||||||  | |||||||||| ||||| || || || |||| ||| ||||||||||||    
T  8629077 tattttgttatagaaatagcttataaataagcacttatatgataaacacttatacttaaaatgtttatccaaacaa 8629002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 270
Target Start/End: Original strand, 30191083 - 30191178
Alignment:
Q  175 ttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 270  Q
    |||||||||| ||||| ||||||  ||| ||||| | |||||||||| ||| | |||||||||| | || || |||| | ||||||||||||||||    
T  30191083 ttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaacttatgacatgttcaaaacttgttttcagcttatttccataa 30191178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 4560633 - 4560567
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    ||||||||||||||||||| |||||| ||| |||||| ||||| |||||| ||| | ||||| ||||    
T  4560633 agcttatctattgacataagcacttgtgaggttgtttggaagaacttatggaaataacttataacat 4560567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 7918385 - 7918486
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataag 271  Q
    |||||||||| || ||||| ||  || |||| ||||| | |||||||||||||| | |||| ||||| | |||||| ||| |||| |||||||| |||||    
T  7918385 agcttatctaatggcataagcagatgagagactgtttgggagagcttatgaaaacaacttaagacatgttcataagctgtttccaacttatttcaataag 7918484  T
Q  272 ct 273  Q
    ||    
T  7918485 ct 7918486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 10383972 - 10383915
Alignment:
Q  216 cttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    |||||||||| | |||||||||| | |||||| ||| | |||||||||||||||||||    
T  10383972 cttatgaaaacagcttatgacattttcataagctgtttacagcttatttccataagct 10383915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 30918203 - 30918143
Alignment:
Q  212 agagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    |||||||||||||| | ||| |||||| | |||||||||| | |||||||||||||||||||    
T  30918203 agagcttatgaaaacaacttgtgacattt-cataagttgttttcagcttatttccataagct 30918143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 2455941 - 2455875
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    ||||||||||  | ||||| |||||||||||||||||||||||||||||| ||| | ||||||||||    
T  2455941 agcttatctaccggcataagcacttgcgagattgtttagaagagcttatggaaacaacttatgacat 2455875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 273
Target Start/End: Complemental strand, 30863369 - 30863276
Alignment:
Q  180 tattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||| ||||||||||||  ||| | ||| | |||||||||||||| | |||||||||| |||||||||||| | ||||||| ||| |||||||    
T  30863369 tattggcataaacacttgttagactctttggtagagcttatgaaaacaacttatgacatgtacataagttgttttcagcttacttctataagct 30863276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 7931699 - 7931766
Alignment:
Q  206 tttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    |||||||||||||||||||| | |||||||||| | | |||||||| | |||||||||||| ||||||    
T  7931699 tttagaagagcttatgaaaacaacttatgacatgttcttaagttgttttcagcttatttccgtaagct 7931766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 275
Target Start/End: Original strand, 32171330 - 32171425
Alignment:
Q  180 tattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagctat 275  Q
    ||||||||||| ||||||||||| |||||   |||||||||||||| | |||||||||  | || ||| | | | |||||||||||||||||||||    
T  32171330 tattgacataagcacttgcgagactgtttgagagagcttatgaaaacagcttatgacaagtccagaagctattttcagcttatttccataagctat 32171425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 34939875 - 34939777
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 270  Q
    |||||||||| ||||||||||| ||| || | ||||| | |||||||| | ||| | |||||||||| | ||||| |||| | ||||||||||||||||    
T  34939875 agcttatctagtgacataaacatttgtgaaactgttttggagagcttacggaaacagcttatgacatgtccataaattgttttcagcttatttccataa 34939777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 769265 - 769194
Alignment:
Q  176 tatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataag 247  Q
    |||||||||  ||||||||||| |||| ||||| || || |||||||||| |||||||||||| | ||||||    
T  769265 tatctattggtataaacacttgtgagactgtttggatgaacttatgaaaacatcttatgacatgttcataag 769194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 31421038 - 31420975
Alignment:
Q  210 gaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    |||||||||||||||| | |||||  ||||| |||||||||| | |||||||||| ||||||||    
T  31421038 gaagagcttatgaaaacaacttatcgcatattcataagttgttttcagcttattttcataagct 31420975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 9027670 - 9027608
Alignment:
Q  211 aagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||||||||| ||| | |||||||||| | |||||||||| | |||||||||| ||||||||    
T  9027670 aagagcttatggaaataacttatgacatgtccataagttgttttcagcttattttcataagct 9027608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 8420136 - 8420237
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataag 271  Q
    |||||||||||||||||||||||||| |||| ||||    |||||||||  ||| | |||||||||| | || ||| | | | || ||||||||||||||    
T  8420136 agcttatctattgacataaacacttgtgagactgttagtgagagcttatagaaatagcttatgacatgtccacaagctattttcaacttatttccataag 8420235  T
Q  272 ct 273  Q
    ||    
T  8420236 ct 8420237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 4331014 - 4331058
Alignment:
Q  175 ttatctattgacataaacacttgcgagattgtttagaagagctta 219  Q
    |||||||||||||||| |||||| ||||||||||| |||| ||||    
T  4331014 ttatctattgacataagcacttgtgagattgtttaaaagaactta 4331058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 6537021 - 6536977
Alignment:
Q  229 cttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    |||||||||| | |||||||||| | |||||||||||||||||||    
T  6537021 cttatgacatgttcataagttgttttcagcttatttccataagct 6536977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 8147012 - 8147080
Alignment:
Q  179 ctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataag 247  Q
    |||||||||||| ||||||  ||| |||||  ||||||||||||||| | ||||| |||||| ||||||    
T  8147012 ctattgacataaccacttgttagactgtttcaaagagcttatgaaaacaacttataacatatgcataag 8147080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 27857486 - 27857414
Alignment:
Q  175 ttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataag 247  Q
    ||||||| ||||||| ||||||| || | ||||| | |||||||||||||| | |||||||||| | ||||||    
T  27857486 ttatctactgacatagacacttgtgaaactgtttgggagagcttatgaaaacaacttatgacatctccataag 27857414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 273
Target Start/End: Original strand, 37241759 - 37241862
Alignment:
Q  171 aagcttatctattgacataaacacttgcgagattgtttagaagagcttatg-aaaagatcttatgacatatacataag-ttgtatccagcttatttccat 268  Q
    ||||||||||| || ||||| ||||||||||||||||||| ||||| |||| |||| | ||||||| |||| |||||| || | |||||||||||| |||    
T  37241759 aagcttatctactg-cataagcacttgcgagattgtttaggagagcatatgcaaaacaacttatgatatattcataagtttttttccagcttattttcat 37241857  T
Q  269 aagct 273  Q
    |||||    
T  37241858 aagct 37241862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 14559100 - 14559038
Alignment:
Q  175 ttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgaca 237  Q
    ||||||| ||||||||||| |||||||||||||||| |||||| ||  ||||| |||||||||    
T  14559100 ttatctactgacataaacatttgcgagattgtttaggagagctaatagaaagagcttatgaca 14559038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 11639389 - 11639456
Alignment:
Q  206 tttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    |||||||||||||||||||| | |||||||||| | |||||| ||| |  ||||||||| ||||||||    
T  11639389 tttagaagagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagct 11639456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 31118130 - 31118075
Alignment:
Q  216 cttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataag 271  Q
    |||||||||| |||||||||||| | ||| |||||| | |||||||||||||||||    
T  31118130 cttatgaaaacatcttatgacatgttcatcagttgttttcagcttatttccataag 31118075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 4202233 - 4202275
Alignment:
Q  275 ttttgttatagaaataccttatacttgagcacttatacgataa 317  Q
    |||||||||||||||| ||||||||| |||||||||| |||||    
T  4202233 ttttgttatagaaataacttatacttaagcacttatatgataa 4202275  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 4757469 - 4757403
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    |||||||||||||||||||||||||| ||||   ||| | ||| |||||||||| | ||||||||||    
T  4757469 agcttatctattgacataaacacttgtgagaccatttggcagaacttatgaaaacaacttatgacat 4757403  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 17420320 - 17420238
Alignment:
Q  186 cataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccat 268  Q
    ||||||||||||  ||| ||||| |||||||||||||||| | ||||| |||| | ||||| |||| | || |||||||||||    
T  17420320 cataaacacttgttagactgttttgaagagcttatgaaaacaacttattacatgtccataaattgttttcaacttatttccat 17420238  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 273
Target Start/End: Complemental strand, 44422831 - 44422729
Alignment:
Q  171 aagcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 270  Q
    ||||||||||| ||  ||||||||||  |||| ||| | | |||||||||||||| | |||||||||| | |||||| ||  | |||||||||| |||||    
T  44422831 aagcttatctactgggataaacacttttgagactgtctgggagagcttatgaaaatagcttatgacatgtccataagctgactacagcttattttcataa 44422732  T
Q  271 gct 273  Q
    |||    
T  44422731 gct 44422729  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 273
Target Start/End: Complemental strand, 3110122 - 3110021
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataag 271  Q
    |||||| ||| |||||||| ||||| ||||| |||||  |||| |||||| ||| | ||| ||||| || ||||| |||| | | |||||||||||||||    
T  3110122 agcttaactagtgacataagcacttccgagactgtttgtaagaacttatgcaaacaacttgtgacacatccataacttgttttccgcttatttccataag 3110023  T
Q  272 ct 273  Q
    ||    
T  3110022 ct 3110021  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 6262134 - 6262050
Alignment:
Q  189 aaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||||||| |||| |||||| |||||||||||| || | |||||||||| | |||||| | | | || |||||||||| |||||    
T  6262134 aaacacttgtgagactgtttacaagagcttatgagaacaacttatgacatgttcataagctattttcaacttatttccacaagct 6262050  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 35017713 - 35017677
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgttt 208  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  35017713 agcttatctattggcataaacacttgtgagattgttt 35017677  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 48748534 - 48748570
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgttt 208  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  48748534 agcttatccattgacataaacacttgtgagattgttt 48748570  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 11457229 - 11457154
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataag 247  Q
    ||||||||||||| || ||||||||| |||| ||||| |||||||||||| ||| | |||||||||| | ||||||    
T  11457229 agcttatctattggcagaaacacttgtgagactgttttgaagagcttatggaaacaacttatgacatgtccataag 11457154  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 38728533 - 38728434
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataag 271  Q
    |||||||||||||  |||||||| || | |||||||| | |||||||||||||| | ||||||||||   | |||| ||| | |||||||||||||||||    
T  38728533 agcttatctattggtataaacacctgtgtgattgtttgggagagcttatgaaaatagcttatgacatgctcctaagctgttttcagcttatttccataag 38728434  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 2568769 - 2568712
Alignment:
Q  192 cacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagtt 249  Q
    |||||| |||| ||||||||||| |||||||||| | |||||||||||| ||||||||    
T  2568769 cacttgagagactgtttagaagaacttatgaaaacagcttatgacatattcataagtt 2568712  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 6109608 - 6109513
Alignment:
Q  178 tctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||||| |||||||||||| |||| | ||| | |||||||||| ||| |  |||||| || | |||||||||| | ||||||||||||| |||||    
T  6109608 tctattggcataaacacttgtgagaatattttggagagcttatggaaaaaaattatgatatgtccataagttgttttcagcttatttccaaaagct 6109513  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 7856667 - 7856605
Alignment:
Q  175 ttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    |||| |||||||| ||||||||||||||||||||| |||| ||||| |||| | ||||||||||    
T  7856667 ttatttattgacaaaaacacttgcgagattgttta-aagaacttataaaaacaacttatgacat 7856605  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 13264062 - 13264136
Alignment:
Q  190 aacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttattt 264  Q
    ||||||||||||| ||||| |||||| ||||| ||| | |||||| ||||| |||||| ||| | ||||||||||    
T  13264062 aacacttgcgagactgtttggaagagtttatggaaacagcttatgccatattcataagctgttttcagcttattt 13264136  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 35095752 - 35095826
Alignment:
Q  199 gagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    |||| ||||| |||||||||||| ||| |||||||||||| |||||| |  || | || ||||||||||||||||    
T  35095752 gagactgtttggaagagcttatggaaatatcttatgacatgtacatatgccgttttcaacttatttccataagct 35095826  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 3977422 - 3977373
Alignment:
Q  189 aaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    ||||||||| |||||||||||||| | |||||||||| | ||||||||||    
T  3977422 aaacacttgtgagattgtttagaaaaacttatgaaaacagcttatgacat 3977373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 35963340 - 35963271
Alignment:
Q  204 tgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||||| ||| |||||| ||| | | |||||||| | |||||||||| | |||||||||||||||||||    
T  35963340 tgtttaggagaacttatggaaatagcgtatgacatgtccataagttgttttcagcttatttccataagct 35963271  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 1899270 - 1899187
Alignment:
Q  186 cataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 270  Q
    ||||||||  || |||| ||||| ||||||||||  |||| | |||||||||| | |||||||||| | ||||||||||||||||    
T  1899270 cataaacatatgtgagactgttttgaagagcttac-aaaacagcttatgacatgtgcataagttgttttcagcttatttccataa 1899187  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 37611175 - 37611255
Alignment:
Q  193 acttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||| ||||||||||   |||||||||||||| | ||| |||||| | |||||| ||| | ||| |||||||||||||||    
T  37611175 acttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagct 37611255  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 37787905 - 37787985
Alignment:
Q  193 acttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||| ||||||||||   |||||||||||||| | ||| |||||| | |||||| ||| | ||| |||||||||||||||    
T  37787905 acttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagct 37787985  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 33894758 - 33894660
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 270  Q
    |||||||| | |||||||| |||||| |||| |||||   |||||||||||||| | | |||||||| | |||||||||| | ||||||||||| ||||    
T  33894758 agcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttatttcaataa 33894660  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 34754749 - 34754850
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataag 271  Q
    |||||||||||||||| ||||||||  |||| |||||   |||||||| ||||| |||||||||||     ||||||||| | |||||||||||||| ||    
T  34754749 agcttatctattgacacaaacacttatgagactgtttgagagagcttaagaaaacatcttatgacaagcctataagttgttttcagcttatttccatcag 34754848  T
Q  272 ct 273  Q
    ||    
T  34754849 ct 34754850  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 39566153 - 39566237
Alignment:
Q  179 ctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatt 263  Q
    |||||| ||||||||  |||||||  ||||||||||||||||| ||| || |||| |||| | |||||||||| | |||||||||    
T  39566153 ctattggcataaacatctgcgagacagtttagaagagcttatggaaacattttatcacatgtccataagttgttttcagcttatt 39566237  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 20553220 - 20553133
Alignment:
Q  186 cataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||| |||||| |||| |||| || |||||||||| ||| | |||| ||||| | |||||||||| | ||| |||||||||||||||    
T  20553220 cataagcacttgtgagactgttcaggagagcttatggaaacagcttacgacatgttcataagttgttttcagattatttccataagct 20553133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 36598297 - 36598388
Alignment:
Q  174 cttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttc 265  Q
    |||| ||| |||||||| || ||| ||||||||||   |||||||||| ||| |||||||||||| | |||||| ||| | |||||||||||    
T  36598297 cttaactactgacataagcaattgtgagattgtttgagagagcttatggaaacatcttatgacatgttcataagctgttttcagcttatttc 36598388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 26935547 - 26935597
Alignment:
Q  223 aaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    ||||||||||||| |||| |||||| ||| | |||||||||||||||||||    
T  26935547 aaagatcttatgaaatattcataagctgttttcagcttatttccataagct 26935597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 46082127 - 46082066
Alignment:
Q  212 agagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 273  Q
    |||||||||||||| | ||||||||||   |||||||||| | |||||||||| ||||||||    
T  46082127 agagcttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagct 46082066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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