View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_6 (Length: 469)
Name: NF10092A_low_6
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 40647030 - 40647498
Alignment:
| Q |
1 |
tcatgaggataatgttgtttcgagctcgctaatcaatatgtatgtcaagtgtggtgaattggagaatggttttcgggtttttcatcagcttggttcgaaa |
100 |
Q |
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| T |
40647030 |
tcatgaggatactgttgtttcgagctcgctaatcaatatgtatgtcaagtgtggtgaattggagaatggttttcgggtttttcatcagcttggttcgaaa |
40647129 |
T |
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| Q |
101 |
gatttagtgtgttggacttgcattgtgtcagggtatgcaatgagtgggaaaacttgggacgcaagaaagctttttgatcagatgcctgtacgaaatgtga |
200 |
Q |
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| T |
40647130 |
gatttagtgtgttggacttgcattgtgtcagggtatgcaatgagtgggaaaacttgggacgcaagaaagctttttgatcagatgcctgtacgaaatgtga |
40647229 |
T |
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| Q |
201 |
tatcgtggaatgctatgttggctggatatacccgattctttaaatggtctgaggcattagattttgtttgtttgatgcttgacactgtaaaggacttgga |
300 |
Q |
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| T |
40647230 |
tatcgtggaatgctatgttggctggatatacccgattctttaaatggtctgaggcattagattttgtttgtttgatgcttgacactgtaaaggacttgga |
40647329 |
T |
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| Q |
301 |
ccatgtcactcttggtttgatgataaatgtgtctgctggccttttggatcatgaaatggggaaacagcttcatggatttgtctatcgacatggtttccac |
400 |
Q |
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| T |
40647330 |
ccatgtcactcttggtttgatgataaatgtgtctgctggccttttggatcatgaaatggggaaacagcttcatggatttgtctatcgacatggtttccac |
40647429 |
T |
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| Q |
401 |
tcaaaccttatggttggcaatgccattcttgacatgtatggtaaatgtgggaacttgaacagtgcccga |
469 |
Q |
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| T |
40647430 |
tcaaaccttatggttggcaatgccattcttgacatgtatggtaaatgtgggaacttgaacagtgcccga |
40647498 |
T |
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