View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_60 (Length: 361)
Name: NF10092A_low_60
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 42444594 - 42444248
Alignment:
| Q |
1 |
ggttgttcatcagagctcataaccgtagttggcatgaatgaatgatgccagctttctaaatcttcttctgattgagtgaatagcttaccctctggcttat |
100 |
Q |
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| T |
42444594 |
ggttgttcatcagagctcataaccgtagttggcatgaatgaatgatgccagctttctaaatcttcttctgattgagtgaatagcttaccctctggcttat |
42444495 |
T |
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| Q |
101 |
tcacatggataatgtatatttttgaagtgcttgtctcagtactccgagcggtagggtgcagttcacttccttgagtaaaatgaatatggaaactcaacac |
200 |
Q |
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| T |
42444494 |
tcacatggataatgtatatttttgaagtgcttgtctcagtactccgagcggtagggtgcagttcacttccttgagtaaaatgaatatggaaactcaacac |
42444395 |
T |
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| Q |
201 |
gaaagtgagagcaatgaaaaggaaataatccatgttcaagagaaactttactttctgcttgatggaagaatgaaagaggtgtgctcta----aatacatt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
42444394 |
gaaagtgagagcaatgaaaaggaaataatccatgttcaagagaaactttactttctgcttgatggaagaatgaaagaagtgtgctctaaataaatacatt |
42444295 |
T |
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| Q |
297 |
cacaatgattatatatttatatgtaactttgtaagtaacactttttg |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42444294 |
cacaatgattatatatttatatgtaactttgtaagtaacactttttg |
42444248 |
T |
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