View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_68 (Length: 352)

Name: NF10092A_low_68
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_68
NF10092A_low_68
[»] chr6 (25 HSPs)
chr6 (14-346)||(4564416-4564748)
chr6 (14-275)||(4592936-4593199)
chr6 (15-250)||(4617728-4617963)
chr6 (24-250)||(4602504-4602730)
chr6 (173-250)||(4506718-4506795)
chr6 (168-250)||(3172597-3172679)
chr6 (21-250)||(4517030-4517259)
chr6 (162-250)||(4481543-4481631)
chr6 (173-250)||(4514315-4514392)
chr6 (178-250)||(4489555-4489627)
chr6 (177-250)||(4461988-4462061)
chr6 (161-250)||(4470652-4470741)
chr6 (161-252)||(4557974-4558065)
chr6 (161-248)||(4586485-4586572)
chr6 (170-252)||(4571830-4571912)
chr6 (161-246)||(4561353-4561438)
chr6 (161-246)||(4575157-4575242)
chr6 (213-249)||(4266358-4266394)
chr6 (19-70)||(4299195-4299246)
chr6 (161-252)||(4612910-4613001)
chr6 (173-250)||(4484033-4484111)
chr6 (186-252)||(4580915-4580981)
chr6 (21-70)||(4568753-4568802)
chr6 (172-244)||(4259354-4259426)
chr6 (170-226)||(4599028-4599084)
[»] scaffold0199 (1 HSPs)
scaffold0199 (28-250)||(183-405)
[»] chr8 (4 HSPs)
chr8 (28-250)||(1674946-1675168)
chr8 (182-250)||(20863037-20863105)
chr8 (19-70)||(20863217-20863268)
chr8 (186-248)||(16685482-16685544)
[»] chr3 (1 HSPs)
chr3 (14-245)||(1281819-1282050)
[»] scaffold0288 (1 HSPs)
scaffold0288 (32-244)||(2918-3130)
[»] chr5 (1 HSPs)
chr5 (213-248)||(24103903-24103938)


Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 4564416 - 4564748
Alignment:
Q  14 agaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaag 113  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4564416 agaggagagagcatttattacatcactctaaagttcatggaaagtattcaaaacaattgtagagtctccaagaactttatcagccgcatcaattacaaag 4564515  T
Q  114 tctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttcca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4564516 tctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaaccgaaagtttttcaaacctggaatccaatctacattagtttcca 4564615  T
Q  214 aatatccatttgttagatagctctcatctgcatatcaaaagtatcagttaatatcttgaaggttatacatacatccgtcaatacatgagtattttgtttt 313  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  4564616 aatatccatttgttagatagctctgatctgcatatcaaatgtatcagttaatatcttgaaggttatacatacatccgtacatacatgagtattttgtttt 4564715  T
Q  314 cgacaaaaacatacatatataataaggtattat 346  Q
    |||||||||||||||||||||||||||||||||    
T  4564716 cgacaaaaacatacatatataataaggtattat 4564748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 4592936 - 4593199
Alignment:
Q  14 agaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |  | || ||||||||||| ||||||||||||||    
T  4592936 agaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaataatagtagagtttttatgatctttatcagccacatcaattacaaag 4593035  T
Q  114 tctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttcca 213  Q
    | ||||||||||||||||||||||||||||||||||  ||||   || ||||| || |||||||||||||||||||||||||||||||| ||||||||||    
T  4593036 tttaacataatatcatttggatctgttgtcctgatatagtcagcaatgtccttcaaccgaaagtttttcaaacctggaatccaatctactttagtttcca 4593135  T
Q  214 aatatccatttgttagatagctctcatctgcatatcaaaagtatc--agttaatatcttgaagg 275  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |  |||||||| ||||||||    
T  4593136 aatatccatttgttagataactctcatctgcatatcaaaagtagcaaagttaatagcttgaagg 4593199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 4617728 - 4617963
Alignment:
Q  15 gaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||     ||||  ||| ||  | || || |  || |    
T  4617728 gaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagtgtctttgttaactcgatctgcaacttctataaagaatt 4617827  T
Q  115 ctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaa 214  Q
    ||||||||||||||||||||| |||||||||||||  ||||| ||| ||||| || ||||||||||||||||| |||||||||||||| |||||||||||    
T  4617828 ctaacataatatcatttggatttgttgtcctgataaagtcaacgatgtccttcaaccgaaagtttttcaaaccgggaatccaatctactttagtttccaa 4617927  T
Q  215 atatccatttgttagatagctctcatctgcatatca 250  Q
    | |||||||||||||||| |||||||||||||||||    
T  4617928 acatccatttgttagataactctcatctgcatatca 4617963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 4602504 - 4602730
Alignment:
Q  24 gcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagtctaacataa 123  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||| |||||||||| |  || | |||| ||    ||||  |  || |||| |||||    
T  4602504 gcattcattacatcactctcaagttcattgtaagtattcaaaagaatagtagagtctctattaaatctatctgcaatttcaaaaaagaattctaccataa 4602603  T
Q  124 tatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatt 223  Q
    ||||||||||||||||||||||||||  |||||  || ||||| || |||||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  4602604 tatcatttggatctgttgtcctgatatagtcaagaatgtccttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatt 4602703  T
Q  224 tgttagatagctctcatctgcatatca 250  Q
    ||||||||| || ||||||||||||||    
T  4602704 tgttagataactatcatctgcatatca 4602730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 4506718 - 4506795
Alignment:
Q  173 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 250  Q
    ||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  4506718 aaagtttctcaaacctggaatccagtctaccttagtgtccaaatatccatttgttagataactctcatctgcatatca 4506795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 3172597 - 3172679
Alignment:
Q  168 aatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 250  Q
    |||| |||||||||||||||||||||||| || ||  |||| ||||||||||||||||||  ||| |||||||||||||||||    
T  3172597 aatctaaagtttttcaaacctggaatccagtcaactatagtgtccaaatatccatttgtttcataactctcatctgcatatca 3172679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 4517030 - 4517259
Alignment:
Q  21 agagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagtctaaca 120  Q
    |||||||||||||||||| ||||||||||||   ||||||| |||||||| | |    || || ||||  |||| ||||| ||||| | ||| | || ||    
T  4517030 agagcatttattacatcattctcaagttcatcagaagtattgaaaacaatagaattagcttcatgaaccctatcggccgcttcaatgataaattttatca 4517129  T
Q  121 taatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatcc 220  Q
    | |||||||| ||||| || || || |||  ||||   |  ||||||| || |||||||  ||||||||||||||| || || ||||| |||||||||||    
T  4517130 ttatatcattaggatcagtagttcttataaagtcaggcaggtcctttagtctaaagtttcccaaacctggaatccagtcaactttagtgtccaaatatcc 4517229  T
Q  221 atttgttagatagctctcatctgcatatca 250  Q
    |||||| | ||| |||||||||||||||||    
T  4517230 atttgtcaaataactctcatctgcatatca 4517259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 4481543 - 4481631
Alignment:
Q  162 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 250  Q
    ||||| |||| |||||||||||||||||||||||| |||||  | |  ||||||||||||| ||||| ||| |||||||||||||||||    
T  4481543 tccttcaatctaaagtttttcaaacctggaatccagtctactgttgcgtccaaatatccatctgttaaataactctcatctgcatatca 4481631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 4514392 - 4514315
Alignment:
Q  173 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 250  Q
    |||||||  ||||||||||||||| || || ||||| ||||||||||||||||| | ||| |||||||||||||||||    
T  4514392 aaagtttcgcaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatca 4514315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 4489627 - 4489555
Alignment:
Q  178 ttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 250  Q
    ||||||||||||||||||| || || ||||| ||||||| ||||| ||||||||  |||||||||||||||||    
T  4489627 ttttcaaacctggaatccattcaactttagtgtccaaatttccatctgttagattactctcatctgcatatca 4489555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 4461988 - 4462061
Alignment:
Q  177 tttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 250  Q
    |||||||||||||||||||| || || | ||| || |||||||||| |||||||||  ||||||||||||||||    
T  4461988 tttttcaaacctggaatccagtcaacttcagtgtctaaatatccatctgttagataaatctcatctgcatatca 4462061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 4470652 - 4470741
Alignment:
Q  161 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 250  Q
    |||||| ||||  ||||||||||||||||||||||| || || | | | || |||||||||| | ||||||| |||||||||||||||||    
T  4470652 atccttcaatctgaagtttttcaaacctggaatccagtcaacttcaatgtcgaaatatccatctattagataactctcatctgcatatca 4470741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 4557974 - 4558065
Alignment:
Q  161 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 252  Q
    |||||| | ||||||||| | ||| |||||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||||||| ||| |||||    
T  4557974 atccttcagtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcagataactctcatctacatgtcaaa 4558065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 4586485 - 4586572
Alignment:
Q  161 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatat 248  Q
    |||||||| ||||||||| | ||| |||||||| || || || ||||| ||||||||||| ||||| ||||| |||| ||||||||||    
T  4586485 atcctttagtcgaaagttctccaatcctggaatacagtccactttagtgtccaaatatccgtttgtcagataactcttatctgcatat 4586572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 4571830 - 4571912
Alignment:
Q  170 tcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 252  Q
    ||||||||| ||||  ||||| || || || || ||||| ||||||||||| ||||| ||||| |||||||||||||||||||    
T  4571830 tcgaaagttcttcagtcctggcatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatatcaaa 4571912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 4561353 - 4561438
Alignment:
Q  161 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcat 246  Q
    |||||| ||||  ||||||||||||||||| ||||| || || || || |||| |||| ||||||||||||  |||||||||||||    
T  4561353 atccttcaatctgaagtttttcaaacctgggatccagtcaactttcgtgtccagatattcatttgttagatcactctcatctgcat 4561438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 4575157 - 4575242
Alignment:
Q  161 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcat 246  Q
    |||||| ||||  ||||||||||||||||| ||||| || |  || || ||||||||| ||||||||||||  |||||||||||||    
T  4575157 atccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcat 4575242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 4266394 - 4266358
Alignment:
Q  213 aaatatccatttgttagatagctctcatctgcatatc 249  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4266394 aaatatccatttgttagataactctcatctgcatatc 4266358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 4299246 - 4299195
Alignment:
Q  19 agagagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 70  Q
    |||||||||| ||||||||||||||||||||||   ||||||| ||||||||    
T  4299246 agagagcattcattacatcactctcaagttcatcataagtattaaaaacaat 4299195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 4613001 - 4612910
Alignment:
Q  161 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 252  Q
    |||||| | ||||||||| | ||| ||| |||| || || || ||||| ||||||||||| ||||| ||||| ||||||||||||| |||||    
T  4613001 atccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcatgtcaaa 4612910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 4484111 - 4484033
Alignment:
Q  173 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttg-ttagatagctctcatctgcatatca 250  Q
    ||||||||||||| |||||| ||| ||||| | ||| ||||||||| |||||| ||||||| |||| || |||||||||    
T  4484111 aaagtttttcaaatctggaacccagtctacttcagtgtccaaatatacatttgcttagataactcttatttgcatatca 4484033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 4580915 - 4580981
Alignment:
Q  186 cctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 252  Q
    |||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||| | ||||||    
T  4580915 cctggaatacaatctactttagtgtccaaatatccgtttgtgagataactgtcatctgtacatcaaa 4580981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 4568753 - 4568802
Alignment:
Q  21 agagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 70  Q
    ||||| |||| |||||||||||||||||||||  ||||||| ||||||||    
T  4568753 agagcctttactacatcactctcaagttcattataagtattgaaaacaat 4568802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 4259426 - 4259354
Alignment:
Q  172 gaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgc 244  Q
    ||||||| ||||| || ||||  || ||||| || || |||| ||||||||||||||||||||||| ||||||    
T  4259426 gaaagttcttcaatccaggaacacagtctactttggtatccagatatccatttgttagatagctcttatctgc 4259354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 4599028 - 4599084
Alignment:
Q  170 tcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgt 226  Q
    ||||||||||| ||  || ||||| |||||||| ||||||||||||||||| |||||    
T  4599028 tcgaaagttttgcagtccaggaatacaatctactttagtttccaaatatccgtttgt 4599084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 28 - 250
Target Start/End: Original strand, 183 - 405
Alignment:
Q  28 ttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagtctaacataatatc 127  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||  ||||||||| ||||||||||||||||||    
T  183 ttattacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatc 282  T
Q  128 atttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgtt 227  Q
    ||||||||| ||||| ||||||| |||||  | |||||| || |||||||||||||||||||||||||| || || || |||||||||||||||||||||    
T  283 atttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgtt 382  T
Q  228 agatagctctcatctgcatatca 250  Q
    ||||  |||||||||||||||||    
T  383 agatgtctctcatctgcatatca 405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 28 - 250
Target Start/End: Original strand, 1674946 - 1675168
Alignment:
Q  28 ttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagtctaacataatatc 127  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||  ||||||||| ||||||||||||||||||    
T  1674946 ttattacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatc 1675045  T
Q  128 atttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgtt 227  Q
    ||||||||| ||||| ||||||| |||||  | |||||| || |||||||||||||||||||||||||| || || || |||||||||||||||||||||    
T  1675046 atttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgtt 1675145  T
Q  228 agatagctctcatctgcatatca 250  Q
    ||||  |||||||||||||||||    
T  1675146 agatgtctctcatctgcatatca 1675168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 20863105 - 20863037
Alignment:
Q  182 caaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 250  Q
    |||||||||||||| ||| || ||||| ||||||||||||||||||||||| |||||||||| ||||||    
T  20863105 caaacctggaatccgatcaactttagtctccaaatatccatttgttagataactctcatctgtatatca 20863037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 20863268 - 20863217
Alignment:
Q  19 agagagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 70  Q
    ||||| |||| || |||||||||||||| |||||||||||||| ||||||||    
T  20863268 agagaacattcataacatcactctcaagctcattgaaagtattgaaaacaat 20863217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 16685544 - 16685482
Alignment:
Q  186 cctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatat 248  Q
    |||||||| || || || ||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  16685544 cctggaatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatat 16685482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 1281819 - 1282050
Alignment:
Q  14 agaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |  |||| |||| |||   ||||| |  ||     
T  1281819 agaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagagtctctattaactctatctgccatttcaataaagaat 1281918  T
Q  114 tctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttcca 213  Q
    |||||||||||||| ||| ||||| |||||||||||  |||||  |||||||| || || || |||||||||||||||||||||||||| || |||||||    
T  1281919 tctaacataatatcgtttcgatctcttgtcctgataaagtcaacaatatccttcaaccggaaatttttcaaacctggaatccaatctacttttgtttcca 1282018  T
Q  214 aatatccatttgttagatagctctcatctgca 245  Q
    ||||||||||||||||||| ||||||||||||    
T  1282019 aatatccatttgttagataactctcatctgca 1282050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 244
Target Start/End: Complemental strand, 3130 - 2918
Alignment:
Q  32 tacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagtctaacataatatcattt 131  Q
    |||||||||||||||||||||  |||| || |||||||||| |||  |||   ||| || ||| || || ||||| | ||| |||| ||||| ||||||     
T  3130 tacatcactctcaagttcattataagtgttaaaaacaattgcagaagctctgtgaaattgatctgctgcttcaatgaaaaattctaccataaaatcattc 3031  T
Q  132 ggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagat 231  Q
     ||||| |||| || |||  ||||   |  ||||||| |||||||||||||| ||| ||||| |||||||| ||  | |||||||||||| |||| | ||    
T  3030 agatcttttgttcttataaagtcaggaaggtcctttagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatccacttgtcaaat 2931  T
Q  232 agctctcatctgc 244  Q
    | || ||||||||    
T  2930 aactatcatctgc 2918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 24103903 - 24103938
Alignment:
Q  213 aaatatccatttgttagatagctctcatctgcatat 248  Q
    |||||||||||||||||||| |||||||||||||||    
T  24103903 aaatatccatttgttagataactctcatctgcatat 24103938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University