View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_7 (Length: 467)
Name: NF10092A_low_7
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 3036391 - 3036837
Alignment:
| Q |
1 |
gaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagaaagatcaattatgtggtgtgctctattgaagaatctaatgatgtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036391 |
gaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaatgatgtga |
3036490 |
T |
|
| Q |
101 |
ctgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggt |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3036491 |
ctgcactcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggt |
3036590 |
T |
|
| Q |
201 |
ttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
3036591 |
ttcgaatggaggaagaggatctatgggatatggtagaggaagagggcattcaggtgctagaggaaagggtaggggaagaatcaacaaagattctattgag |
3036690 |
T |
|
| Q |
301 |
tgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggg-gaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctg |
399 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3036691 |
tgttataagtgtcacaagctgggacactatcagaatgaatgtcccctatgggaaaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctg |
3036790 |
T |
|
| Q |
400 |
atggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036791 |
atggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
3036837 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 4 - 446
Target Start/End: Original strand, 16863141 - 16863584
Alignment:
| Q |
4 |
aagatggatcaaacactggttgttgagaagattctgagatctttaacaagaaagatcaattatgtggtgtgctctattgaagaatctaatgatgtgactg |
103 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||| || | ||||| ||| ||||||| ||| | ||||| |||||||| ||| |
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|
| T |
16863141 |
aagatggatcaaacacttgttgttgaaaagattctgagatctttaacaagtaaatttaattacgtgctgtgctcaattcatgaatcaaatgatgtaacta |
16863240 |
T |
|
| Q |
104 |
cattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttc |
203 |
Q |
| |
|
|| ||| || |||||||||| || || |||||||||||||||| |||||| ||| |||| |||||||||||||||||||| ||||||||||||| || |
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|
| T |
16863241 |
cactctcaattaatgaacttcatagcagtttacttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaacaagctttgaaggcatc |
16863340 |
T |
|
| Q |
204 |
gaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgt |
303 |
Q |
| |
|
||||| |||||||||||| | |||| |||||||||||||||||||||||||| |||||||| |||||| |||||||| |||| | | |||| || |
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|
| T |
16863341 |
taatggtggaagaggatctgtaggatatggtagaggaagagggcgttcaggtgttagaggaaggggtagaggaagaattaacaatggaagtgttgaatgc |
16863440 |
T |
|
| Q |
304 |
ta-taagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatg |
402 |
Q |
| |
|
|| ||||||||| |||||||||||||||| ||||||||||| ||||||| | |||||||| | |||| | | ||||||||||||||||||||||||||| |
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|
| T |
16863441 |
tacaaagtgtcacaagctgggacactatcaaaatgaatgtcctctatgggaagaaaatgcacactatgttgagtttgaagatggtgaattgcttctgatg |
16863540 |
T |
|
| Q |
403 |
gctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
446 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16863541 |
gctcaatcatgtttgaacacaaatgccaaagatgaggtatggtt |
16863584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 8e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 20528762 - 20529205
Alignment:
| Q |
1 |
gaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagaaagatcaattatgtggtgtgctctattgaagaatctaatgatgtga |
100 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
20528762 |
gaaaagatggatcaaactctgcttgttgaaaagatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgatgtga |
20528861 |
T |
|
| Q |
101 |
ctgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggt |
200 |
Q |
| |
|
| || | | ||| ||||| | || ||||| |||||||||||||||| |||||| |||||||| || ||||||| ||||| |||||||||||||||||| |
|
|
| T |
20528862 |
caacactttccattaatgaattacatagtagtttacttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttgaaggt |
20528961 |
T |
|
| Q |
201 |
ttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgag |
300 |
Q |
| |
|
||| ||||| |||||||||||| |||||| ||| |||||||||||||||||| | ||||||| || | |||||||| |||| ||||| |||| |
|
|
| T |
20528962 |
ttctaatggtggaagaggatctgtgggatatgggagaggaagagggcgttcaag-caaagaggaagatgtggaggaagaattaaca-agatttagttgaa |
20529059 |
T |
|
| Q |
301 |
tgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctga |
400 |
Q |
| |
|
|| ||||||||||| |||| |||||||||||||||||||||| ||||||| | |||| ||||||||||| ||||||||||||||||||| | ||| | |
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|
| T |
20529060 |
tgcaataagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaaccaaattcaaattatgctgaatttgaagatggtgaatttcatctca |
20529159 |
T |
|
| Q |
401 |
tggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
446 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
20529160 |
tggctcaaacatgattgaacacaaatgtcaaagatgaggtatggtt |
20529205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 4 - 446
Target Start/End: Complemental strand, 40613229 - 40612799
Alignment:
| Q |
4 |
aagatggatcaaacactggttgttgagaagattctgagatctttaacaagaaagatcaattatgtggtgtgctctattgaagaatctaatgatgtgactg |
103 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| |||||||||||||||| || |||||||||||||||| || ||||||||||| || || || ||| |
|
|
| T |
40613229 |
aagatggatcaaacgctggttgttgaaaagattttgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaatcaaacgacgtcacta |
40613130 |
T |
|
| Q |
104 |
cattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttc |
203 |
Q |
| |
|
|| | | || ||||| | |||||||| |||||||||||||||| || ||| |||||||| |||||||| |||||| |||| ||||||||||||||||| |
|
|
| T |
40613129 |
cactatcaattgatgagttgcagagtagtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaacaagctttgaaggtttc |
40613030 |
T |
|
| Q |
204 |
gaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgt |
303 |
Q |
| |
|
||||| | |||||| | |||| | ||||||||||||||| ||||||||||||||||||| ||||||||| || | |||||||| |
|
|
| T |
40613029 |
caatggtgaaagaggtttcgtggggtatggtagaggaagaggacgttcaggtgctagaggaa------------gaatcaacaaagcaagtgttgagtgt |
40612942 |
T |
|
| Q |
304 |
tataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatgg |
403 |
Q |
| |
|
| |||||||| | || |||||||||| |||||||| ||||| ||||||| | ||||||| || | |||| | ||||||||||||||||| ||||| |||| |
|
|
| T |
40612941 |
tttaagtgtcgcaagttgggacactaccagaatgagtgtcctctatgggaagaaaatgctaactttgctaagtttgaagatggtgaattacttcttatgg |
40612842 |
T |
|
| Q |
404 |
ctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
446 |
Q |
| |
|
| ||||| ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
40612841 |
cccaatcttgcttgaacacaaacgccaaagatgaggtatggtt |
40612799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 20542093 - 20542289
Alignment:
| Q |
4 |
aagatggatcaaacactggttgttgagaagattctgagatctttaacaagaaagatcaattatgtggtgtgctctattgaagaatctaatgatgtgactg |
103 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||||| || ||||||||||| ||||| || ||| |
|
|
| T |
20542093 |
aagatggatcaaacgctggttgttgaaaagattctgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaatcaaatgacgtcacta |
20542192 |
T |
|
| Q |
104 |
cattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggt |
200 |
Q |
| |
|
| | | || ||||| | |||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| |||| |||||||||||||| |
|
|
| T |
20542193 |
cgctatcaattgatgagttgcagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagctttgaaggt |
20542289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 258 - 446
Target Start/End: Original strand, 20542323 - 20542511
Alignment:
| Q |
258 |
tagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaa |
357 |
Q |
| |
|
|||||||| ||| || ||||||||||||| || | ||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| | || |
|
|
| T |
20542323 |
tagaggaaggggcagaggaagaatcaacaaagcaagtgttgagtgtttcaagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaagaa |
20542422 |
T |
|
| Q |
358 |
aatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
446 |
Q |
| |
|
||||| || | |||| | ||||||||||||||||| ||||| ||||||||||| ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
20542423 |
aatgctaactttgctgagtttgaagatggtgaattacttcttatggctcaatcttgcttgaacacaaacgccaaagatgaggtatggtt |
20542511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 23940233 - 23940152
Alignment:
| Q |
20 |
tggttgttgagaagattctgagatctttaacaagaaagatcaattatgtggtgtgctctattgaagaatctaatgatgtgact |
102 |
Q |
| |
|
|||| |||||||||||| | ||||| ||| |||| ||| |||||| ||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
23940233 |
tggtggttgagaagattttaagatcatta-caagcaagttcaattgtgtggtgtgttccattgaagaatcaaatgatgtgact |
23940152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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