View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_71 (Length: 349)

Name: NF10092A_low_71
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_71
NF10092A_low_71
[»] chr6 (10 HSPs)
chr6 (20-323)||(1845755-1846058)
chr6 (100-227)||(1827215-1827343)
chr6 (96-231)||(1831993-1832129)
chr6 (86-231)||(1839090-1839238)
chr6 (95-231)||(6465170-6465307)
chr6 (105-231)||(6526219-6526346)
chr6 (121-231)||(6473247-6473357)
chr6 (129-231)||(6457245-6457347)
chr6 (76-231)||(1841992-1842148)
chr6 (124-226)||(6505347-6505449)
[»] chr7 (3 HSPs)
chr7 (170-231)||(46383330-46383391)
chr7 (181-234)||(46383849-46383901)
chr7 (171-231)||(3754032-3754092)


Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 1846058 - 1845755
Alignment:
Q  20 catcacctcctttaaaatgaaatgttgttggaagggttttgtatatgccttaacggtcgaaatacattagacacatgtaattagagtttgaatttctact 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1846058 catcacctcctttaaaatgaaatgttgttggaagggttttgtatatgccttaacggtcgaaatacattagacacatgtaattagagtttgaatttctact 1845959  T
Q  120 caggtcataaaatctgcaatgagtaaataggcttgaggcttaaattttccaccccaaattggatcaatctttgcaagcactgaaattccgtagagaaagt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1845958 caggtcataaaatctgcaatgagtaaataggcttgaggcttaaattttccaccccaaattggatcaatctttgcaagcactgaaatttcgtagagaaagt 1845859  T
Q  220 atcctaaatgatgataaatcatggtcaatagnnnnnnntaaagtcgaagaagataagacacgcctaaagtaattttttggctgaatctaaaagacgttcc 319  Q
    ||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  1845858 atcgtaaatgatgataaatcatggtcaatagaaaaaaataaagtcgaagaagataagacacgcctaaagtaattttttgacagaatctaaaagacgttcc 1845759  T
Q  320 atgt 323  Q
    ||||    
T  1845758 atgt 1845755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 227
Target Start/End: Complemental strand, 1827343 - 1827215
Alignment:
Q  100 ttagagtttgaatttctactc-aggtcataaaatctgcaatgagtaaataggcttgaggcttaaattttccaccccaaattggatcaatctttgcaagca 198  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  1827343 ttagagttcgaatttctactcgaggtcataaaatcggcaatgagtgaataggcttgaggcttatattttctaccccaaattgaatcaatctttgcaagca 1827244  T
Q  199 ctgaaattccgtagagaaagtatcctaaa 227  Q
    ||| |||||  ||||||||||||||||||    
T  1827243 ctgcaattcgatagagaaagtatcctaaa 1827215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 96 - 231
Target Start/End: Complemental strand, 1832129 - 1831993
Alignment:
Q  96 gtaattagagtttgaatttctactca-ggtcataaaatctgcaatgagtaaataggcttgaggcttaaattttccaccccaaattggatcaatctttgca 194  Q
    |||||| ||||||||||||||||||| ||||||||||||  |||||||| ||||||||||||||||| | | || |||||||||||||||||||||||||    
T  1832129 gtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatactctctaccccaaattggatcaatctttgca 1832030  T
Q  195 agcactgaaattccgtagagaaagtatcctaaatgat 231  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  1832029 agcactgcaattccaaagagaaagtatcctaaatgat 1831993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 86 - 231
Target Start/End: Complemental strand, 1839238 - 1839090
Alignment:
Q  86 ttagacacatgtaattagagtttgaatttctactc-aggtcataaaatctgcaatgagtaaataggcttgaggc----ttaaattttccaccccaaattg 180  Q
    |||||||||||||||||||||| |||||||||||  |||||||||||| |||||||||| |||||| |||||||    |||||||||  |||||||||||    
T  1839238 ttagacacatgtaattagagttcgaatttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattg 1839139  T
Q  181 gatcaatctttgcaagcactgaaattccgtagagaaagtatcctaaatgat 231  Q
    ||||||||||||   |||||| |||||  |||||||| |||||||||||||    
T  1839138 gatcaatctttg--tgcactgcaattcattagagaaactatcctaaatgat 1839090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 95 - 231
Target Start/End: Original strand, 6465170 - 6465307
Alignment:
Q  95 tgtaattagagtttgaatttctactcaggt-cataaaatctgcaatgagtaaataggcttgaggcttaaattttccaccccaaattggatcaatctttgc 193  Q
    ||||||| ||||| | |||||| |||| || ||||||||| || |||||| |||| |||||||||||| | || | ||||||||||||||||||||||||    
T  6465170 tgtaattcgagttcggatttctgctcaagttcataaaatcagccatgagtgaataagcttgaggcttatacttcctaccccaaattggatcaatctttgc 6465269  T
Q  194 aagcactgaaattccgtagagaaagtatcctaaatgat 231  Q
    |||||| | |||||| ||||||||||||||||||||||    
T  6465270 aagcacagcaattccatagagaaagtatcctaaatgat 6465307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 6526219 - 6526346
Alignment:
Q  105 gtttgaatttctactcaggt-cataaaatctgcaatgagtaaataggcttgaggcttaaattttccaccccaaattggatcaatctttgcaagcactgaa 203  Q
    |||||||||||| ||||| | ||||||||| || ||||   |||||||||||| |||| | |||| ||||||||| ||||||||||| |||||||||| |    
T  6526219 gtttgaatttctgctcagattcataaaatcagccatgacagaataggcttgagacttatactttctaccccaaataggatcaatcttagcaagcactgca 6526318  T
Q  204 attccgtagagaaagtatcctaaatgat 231  Q
    ||||| ||||||||||||||||||||||    
T  6526319 attccatagagaaagtatcctaaatgat 6526346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 6473357 - 6473247
Alignment:
Q  121 aggtcataaaatctgcaatgagtaaataggcttgaggcttaaattttccaccccaaattggatcaatctttgcaagcactgaaattccgtagagaaagta 220  Q
    |||||||||||||| | ||||||  |||||||||||||||| ||||   |||||||| |||||||||||| |||||||||| |||||| |||||||||||    
T  6473357 aggtcataaaatcttccatgagtgcataggcttgaggcttatatttcttaccccaaactggatcaatcttagcaagcactgcaattccatagagaaagta 6473258  T
Q  221 tcctaaatgat 231  Q
     ||||||||||    
T  6473257 acctaaatgat 6473247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 6457245 - 6457347
Alignment:
Q  129 aaatctgcaatgagtaaataggcttgaggcttaaattttccaccccaaattggatcaatctttgcaagcactgaaattccgtagagaaagtatcctaaat 228  Q
    |||||||| |||||| |||| |||||||| ||| | ||||  ||||||  ||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  6457245 aaatctgccatgagtgaataagcttgaggtttatactttcttccccaagctggatcaatctttgcaagcactgcaattccatagagaaagtatcctaaat 6457344  T
Q  229 gat 231  Q
    |||    
T  6457345 gat 6457347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 1842148 - 1841992
Alignment:
Q  76 tcgaaatacattagacacatgtaattagagtttgaatttctactc-aggtcataaaatctgcaatgagtaaataggcttgaggcttaaattttccacccc 174  Q
    |||||| || |||||||| ||| |||||||||||||||||||||| |||||||||||||    |||||| |||   |||||| || | | |||  | |||    
T  1842148 tcgaaacaccttagacacgtgtcattagagtttgaatttctactcaaggtcataaaatccttcatgagtgaatccacttgagtctcatactttgtatccc 1842049  T
Q  175 aaattggatcaatctttgcaagcactgaaattccgtagagaaagtatcctaaatgat 231  Q
    |||||||||||||||| ||| ||| || |||||| ||||||||||| | ||||||||    
T  1842048 aaattggatcaatcttagcatgcaatgcaattccatagagaaagtaacttaaatgat 1841992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 6505347 - 6505449
Alignment:
Q  124 tcataaaatctgcaatgagtaaataggcttgaggcttaaattttccaccccaaattggatcaatctttgcaagcactgaaattccgtagagaaagtatcc 223  Q
    ||||||||||| | |  ||| |||||||||||| |||| |||| | ||||||  ||||||| |||||| |||||||||  ||| |||| ||||| |||||    
T  6505347 tcataaaatcttccacaagtgaataggcttgagccttatatttcctaccccatgttggatcgatctttacaagcactgctattgcgtaaagaaaatatcc 6505446  T
Q  224 taa 226  Q
    |||    
T  6505447 taa 6505449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 46383330 - 46383391
Alignment:
Q  170 accccaaattggatcaatctttgcaagcactgaaattccgtagagaaagtatcctaaatgat 231  Q
    ||||||||| ||||||||||| || ||||||| |||||| |||||| | |||||||||||||    
T  46383330 accccaaataggatcaatcttggcgagcactgtaattccatagagagaatatcctaaatgat 46383391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 46383849 - 46383901
Alignment:
Q  181 gatcaatctttgcaagcactgaaattccgtagagaaagtatcctaaatgatgat 234  Q
    |||||||||| |||||||| | |||||| |||||||| ||||||||||||||||    
T  46383849 gatcaatcttagcaagcac-gcaattccatagagaaaatatcctaaatgatgat 46383901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 3754092 - 3754032
Alignment:
Q  171 ccccaaattggatcaatctttgcaagcactgaaattccgtagagaaagtatcctaaatgat 231  Q
    ||||||| |||||||||||||||||| || | |||||| || ||||| || ||||||||||    
T  3754092 ccccaaaatggatcaatctttgcaagaacagcaattccataaagaaaataacctaaatgat 3754032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University