View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_72 (Length: 346)
Name: NF10092A_low_72
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_72 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 3682934 - 3683256
Alignment:
| Q |
7 |
cacgccatatcaatacatcattctccaatcactacaattactcaatcgaactacaccactccaaaatattgtgtgagcacaaatacaaattcttgagaag |
106 |
Q |
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| T |
3682934 |
cacgccatatcaatacatcattctccaatcactacaattactcaatcgaactacaccactccaaaatattgtgtgagcacaaatacaaattcttgagaag |
3683033 |
T |
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| Q |
107 |
nnnnnnnnncccctccctattttggttgctgaattttagttttttgtcaacaaaatgggatcaaagagggattttgcagtgaatgttttgattggatggt |
206 |
Q |
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| T |
3683034 |
aaaaaaaacccc-----tattttggttgctgaattttagttttttgtcaacaaaatgggatcaaagagggattttgcagtgaatgttttgattggatggt |
3683128 |
T |
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| Q |
207 |
tgagtaagaggtcaatgaaagtgaagatcttgttgggaatattgcttgctttttgtgctgtggtgattctaaagcatactatcacagaccctcatttttt |
306 |
Q |
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| T |
3683129 |
tgagtaagaggtcaatgaaagtgaagatcttgttgggaatattgcttgctttttgtgctgtggtgattctaaagcatactatcacagaccctcatttttt |
3683228 |
T |
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| Q |
307 |
ctacatagcctctggatcaatccatatt |
334 |
Q |
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| T |
3683229 |
ctacatagcctctggatcaatccatatt |
3683256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 158 - 334
Target Start/End: Original strand, 3661277 - 3661453
Alignment:
| Q |
158 |
aaaatgggatcaaagagggattttgcagtgaatgttttgattggatggttgagtaagaggtcaatgaaagtgaagatcttgttgggaatattgcttgctt |
257 |
Q |
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| T |
3661277 |
aaaatgggatcaaagagggattcaccggtgaatgttatgtttggatggctgaggaaaagatcaatgaaagtgaagatctttttgggaatattgcttgctt |
3661376 |
T |
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| Q |
258 |
tttgtgctgtggtgattctaaagcatactatcacagaccctcattttttctacatagcctctggatcaatccatatt |
334 |
Q |
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| T |
3661377 |
tttgtgctattgtggttctaaagcatactatcagagagccaaattttttcttcaaagcctctgaaacagtccatatt |
3661453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 126 - 272
Target Start/End: Original strand, 3666146 - 3666291
Alignment:
| Q |
126 |
ttttggttgctgaattttagttttttgtcaacaaaatgggatcaaagagggattttgcagtgaatgttttgattggatggttgagtaagaggtcaatgaa |
225 |
Q |
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||||||||||| ||||| ||||| |||| ||||||||||||||||| ||||| | | |||||||| ||| | | |||||||| || ||||||||||| |
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| T |
3666146 |
ttttggttgctagatttttatttttggtca-caaaatgggatcaaagaaggattctcccgtgaatgtattgtctagctggttgaggaataggtcaatgaa |
3666244 |
T |
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| Q |
226 |
agtgaagatcttgttgggaatattgcttgctttttgtgctgtggtga |
272 |
Q |
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| T |
3666245 |
agtgaagatctttttgggaatattgcttgctttttgtgctgtggtga |
3666291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 156 - 280
Target Start/End: Original strand, 3675641 - 3675765
Alignment:
| Q |
156 |
acaaaatgggatcaaagagggattttgcagtgaatgttttgattggatggttgagtaagaggtcaatgaaagtgaagatcttgttgggaatattgcttgc |
255 |
Q |
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|||||||||||||||||||||||| | |||||||||||| | ||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| |
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| T |
3675641 |
acaaaatgggatcaaagagggattcccctgtgaatgttttgtctatatggttgaggaagagatcaatgaaagtgaaaatctttttgggaatattgcttgc |
3675740 |
T |
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| Q |
256 |
tttttgtgctgtggtgattctaaag |
280 |
Q |
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|||| |||| ||||| ||||||| |
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| T |
3675741 |
attttctgctttggtggctctaaag |
3675765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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