View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_73 (Length: 346)
Name: NF10092A_low_73
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_73 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 31300703 - 31300395
Alignment:
| Q |
17 |
tcaacttcaggcacaagggaagcttaaataaacatggtggtcgacatggagggaggtgacttttatgtgtgtttatctcacgaaacattcattgtatcct |
116 |
Q |
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| T |
31300703 |
tcaacttcaggcacaagggaagcttaaataaacatggtggtcgacatggagggaggtgacttttatgtgtgtttatctcacgaaacattcattgtatcct |
31300604 |
T |
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| Q |
117 |
tattatagggagccacttaaaatggccaccatccttttgtctttctcctcaaaataatctattccataacttagactatcttgtctgaaaccacctaaca |
216 |
Q |
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| T |
31300603 |
tattatagggagccacttcagatggccaccatccttttgtctttctcctcaaaataatctattccataactcagactatcttatctgaaaccacctaaca |
31300504 |
T |
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| Q |
217 |
cattatcaacaaacttgacgaagttgtctgcttctcttcatgtcggaaagcaacccaaatgtgatattgttggaagaacttctgattcacagacgtgaaa |
316 |
Q |
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| T |
31300503 |
cagtatcaacaaacttgacgaagttgtctgcttctcttcatgtcggaaagcaacccaaatgtgatattgttggaagaacttctgattcacatacgtgaaa |
31300404 |
T |
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| Q |
317 |
tcatgccta |
325 |
Q |
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| T |
31300403 |
tcacgccta |
31300395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 53388922 - 53388975
Alignment:
| Q |
17 |
tcaacttcaggcacaagggaagcttaaataaacatggtggtcgacatggaggga |
70 |
Q |
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| T |
53388922 |
tcaacttcagccacaagggaagcttcataaaacatggaggtcgacatagaggga |
53388975 |
T |
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