View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_76 (Length: 342)
Name: NF10092A_low_76
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 41734874 - 41735184
Alignment:
| Q |
20 |
atgagatgctagcaaattatgagtacctgttagaatgaagaaaagaataagccaagggagaagagtgattattttcactaatagattttgcttcatcata |
119 |
Q |
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| T |
41734874 |
atgagatgctagcaaattatgagtacctgttataatgaagaaaagaataagccaagggagaagagtgattattttcactaatagattttgcttcatcata |
41734973 |
T |
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| Q |
120 |
ttatgatcagtggcagattgaattggtgatgtcaagatggatggtaaaagtgtataaatactctaccaaggttggcatatggtagatcaccaatctg--- |
216 |
Q |
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| T |
41734974 |
ttatgatcagtggcagattgaattggtgatgtcaagatggatggtaaaagtgtataaatactctaccaaggttggcatatggtagattaccaatctgatc |
41735073 |
T |
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| Q |
217 |
attaggccaactatatatcgaattggtgtgaagaatatatgactatcgcccatcactagtgaaaaatgggaattacaagataaaagacgttttcgcaatt |
316 |
Q |
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| T |
41735074 |
attaggccaactatatattgaattggtgtgaagaatatatgactatcgcccatcactagtgcaaaatgggaattacaagataaaagacattttcgcaatt |
41735173 |
T |
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| Q |
317 |
aaattgatgtc |
327 |
Q |
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| T |
41735174 |
aaattgatgtc |
41735184 |
T |
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