View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_78 (Length: 340)

Name: NF10092A_low_78
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_78
NF10092A_low_78
[»] chr3 (13 HSPs)
chr3 (13-340)||(8472314-8472641)
chr3 (13-295)||(6837832-6838114)
chr3 (13-340)||(8567900-8568227)
chr3 (127-213)||(6266566-6266652)
chr3 (127-213)||(6246183-6246269)
chr3 (131-248)||(6917962-6918079)
chr3 (127-191)||(13269660-13269724)
chr3 (127-215)||(6143192-6143280)
chr3 (127-183)||(6849845-6849901)
chr3 (127-215)||(7750974-7751062)
chr3 (127-194)||(6238561-6238628)
chr3 (302-340)||(5250922-5250960)
chr3 (16-74)||(5299795-5299853)
[»] chr7 (1 HSPs)
chr7 (13-340)||(6572244-6572571)
[»] scaffold0425 (1 HSPs)
scaffold0425 (127-183)||(12953-13009)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 340
Target Start/End: Complemental strand, 8472641 - 8472314
Alignment:
Q  13 aatatcatggcagagctgattgctggagcatttctttcgtcattctttcaagtcactcttgataggattgcctcaagagatttcaaagacctcttcaata 112  Q
    ||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| | || |||||||||||||||||||||||||||| |||||    
T  8472641 aatatcatggcagagttgattggtggagcatttctttcatcattctttcaagtcactcttcagagcattgcctcaagagatttcaaagacctctgcaata 8472542  T
Q  113 aaaagttgattaacaaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccagaaccaaaatgttaagaattg 212  Q
    |||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8472541 aaaagttggttaaaaaactcgaaatcacattgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccagaaccaaaatgttaagaattg 8472442  T
Q  213 gctcgatcgtcttaaacacgaggtgtatgaagtagatcagttgttagatgagtttgatacacatgtacaacgaaagagcaaggttcaacacttcttttca 312  Q
    ||| |||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  8472441 gcttgatcgtctaaaacatgaggtatatgaagtagatcaattgttggatgagtttgatacaagtgtacaacgaaagagcaaggttcaacacttcctttca 8472342  T
Q  313 gctttcactaatcgatttgaatctagga 340  Q
    ||||||| ||||||||||||||||||||    
T  8472341 gctttcattaatcgatttgaatctagga 8472314  T

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Target: chr3; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 6837832 - 6838114
Alignment:
Q  13 aatatcatggcagagctgattgctggagcatttctttcgtcattctttcaagtcactcttgataggattgcctcaagagatttcaaagacctcttcaata 112  Q
    |||||||||||||||||| |||  |||||| |||||||||||||||||| ||||| |||| | || |||| |||||||||||||||||||||||||||||    
T  6837832 aatatcatggcagagctggttggcggagcagttctttcgtcattctttccagtcattcttaagagaattggctcaagagatttcaaagacctcttcaata 6837931  T
Q  113 aaaagttgattaacaaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccagaaccaaaatgttaagaattg 212  Q
    |||||||| || | ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| ||    
T  6837932 aaaagttggttgagaaacttgaagtcacactgaattctatcgatcaattgttgaatgatgcagagacaaagaagtaccaaaaccaaaatgtgaagaagtg 6838031  T
Q  213 gctcgatcgtcttaaacacgaggtgtatgaagtagatcagttgttagatgagtttgatacacatgtacaacgaaagagcaagg 295  Q
    | | |||  ||| ||||| ||||| |||||||||||||| ||||| |||||| |||||||| ||||| |||  ||||||||||    
T  6838032 gtttgataatctaaaacatgaggtatatgaagtagatcaattgttggatgagattgatacaaatgtaaaactcaagagcaagg 6838114  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 8567900 - 8568227
Alignment:
Q  13 aatatcatggcagagctgattgctggagcatttctttcgtcattctttcaagtcactcttgataggattgcctcaagagatttcaaagacctcttcaata 112  Q
    ||||||||||||||||||||||| || ||||||||||||||  |||||||||| ||| || | ||| | || ||||||||||||| || |  |||   ||    
T  8567900 aatatcatggcagagctgattgcgggggcatttctttcgtctgtctttcaagtgactattcagaggttggcttcaagagatttcagaggctgctttcgta 8567999  T
Q  113 aaaagttgattaacaaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccagaaccaaaatgttaagaattg 212  Q
    ||  |||| |  |  |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| ||||||| |||  | |||| ||||| ||    
T  8568000 aagggttggtggaagaacttgaaatcacacttaattctataaatcaattgttggatgatgcagaaacaaagcagtaccaaaacacatatgtgaagaactg 8568099  T
Q  213 gctcgatcgtcttaaacacgaggtgtatgaagtagatcagttgttagatgagtttgatacacatgtacaacgaaagagcaaggttcaacacttcttttca 312  Q
    |||  ||   || ||||| ||||| |||||||| || ||  | || |||    ||| |||  ||| |||| ||||| | |||   ||||||||| |||||    
T  8568100 gcttcataaactaaaacatgaggtatatgaagttgagcaactattggatattattgctaccaatgcacaaagaaagggaaagacgcaacacttcctttca 8568199  T
Q  313 gctttcactaatcgatttgaatctagga 340  Q
    | ||| ||||||||||||||||||||||    
T  8568200 ggttttactaatcgatttgaatctagga 8568227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 6266652 - 6266566
Alignment:
Q  127 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccagaaccaaaatgttaagaattgg 213  Q
    ||||||||||||||||||  ||||||||||||| || ||||||| |||||||||||||||||| |||| ||||| || |||||||||    
T  6266652 aaacttgaaatcacactggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtgaagaattgg 6266566  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 6246269 - 6246183
Alignment:
Q  127 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccagaaccaaaatgttaagaattgg 213  Q
    ||||||||||||||| ||  ||||||||||||| || ||||||| |||||||||||||||||| |||| ||||| || |||||||||    
T  6246269 aaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtgaagaattgg 6246183  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 6918079 - 6917962
Alignment:
Q  131 ttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccagaaccaaaatgttaagaattggctcgatcgtcttaaaca 230  Q
    ||||||||||| || ||||||||||| || || | ||||||||||||  |||| ||||||| |||| | | || ||||||||||| |||  ||| |||||    
T  6918079 ttgaaatcacattggattctatcaatgaagtgcttgatgatgcagaggtaaagcagtaccaaaaccgagacgtgaagaattggcttgatgatctcaaaca 6917980  T
Q  231 cgaggtgtatgaagtaga 248  Q
    |||||| |||||||||||    
T  6917979 cgaggtatatgaagtaga 6917962  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 13269660 - 13269724
Alignment:
Q  127 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtacca 191  Q
    |||||||||||||||||||| ||||||||| | ||| ||||||| |||||||| ||| |||||||    
T  13269660 aaacttgaaatcacactgaagtctatcaattatttgctggatgacgcagagactaagcagtacca 13269724  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 6143280 - 6143192
Alignment:
Q  127 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccagaaccaaaatgttaagaattggct 215  Q
    ||||||||||||||||| || ||||||||| |  || |||||||  ||||||||||| ||||||| || ||||  || |||||||||||    
T  6143280 aaacttgaaatcacactcaagtctatcaattatgtgctggatgacacagagacaaagcagtaccaaaatcaaaccgtgaagaattggct 6143192  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 6849845 - 6849901
Alignment:
Q  127 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaag 183  Q
    ||||||||||||| |||||||||||||||| ||  | |||||| |||||||||||||    
T  6849845 aaacttgaaatcaaactgaattctatcaatgaagagctggatgttgcagagacaaag 6849901  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 7751062 - 7750974
Alignment:
Q  127 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccagaaccaaaatgttaagaattggct 215  Q
    |||||||||||||||||  ||||||||||| || |  ||||||||||||| | |||| |||||||  ||| ||| || |||||||||||    
T  7751062 aaacttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtaccaacaccgaaacgtgaagaattggct 7750974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 6238628 - 6238561
Alignment:
Q  127 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccagaa 194  Q
    |||||||||||||||||||| ||||||||| || || ||||||| | ||||||| || ||||| ||||    
T  6238628 aaacttgaaatcacactgaagtctatcaataaagtgctggatgacgaagagacagagtagtacgagaa 6238561  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 5250960 - 5250922
Alignment:
Q  302 acttcttttcagctttcactaatcgatttgaatctagga 340  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  5250960 acttcttttcatctttcactaatccatttgaatctagga 5250922  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 5299853 - 5299795
Alignment:
Q  16 atcatggcagagctgattgctggagcatttctttcgtcattctttcaagtcactcttga 74  Q
    |||||||||||  || ||| ||||||||||||||| ||||||||||||||  |||||||    
T  5299853 atcatggcagaattggttggtggagcatttctttcatcattctttcaagtggctcttga 5299795  T

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Target: chr7 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 6572244 - 6572571
Alignment:
Q  13 aatatcatggcagagctgattgctggagcatttctttcgtcattctttcaagtcactcttgataggattgcctcaagagatttcaaagacctcttcaata 112  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||    
T  6572244 aatatcatggcagagctgattgctggagcatttctttcgtcgttctttcaagtcactcttgagaggtttgcctcaagagatttcaaagatctcttcaata 6572343  T
Q  113 aaaagttgattaacaaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccagaaccaaaatgttaagaattg 212  Q
    ||  |||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||| |||| ||| || |||| |||    
T  6572344 aagggttggttgaaaaacttgaaatcacaatgaattctatcaatcaattgttggatgatgcagagacaaaacagtaccaaaacccaaacgtgaagatttg 6572443  T
Q  213 gctcgatcgtcttaaacacgaggtgtatgaagtagatcagttgttagatgagtttgatacacatgtacaacgaaagagcaaggttcaacacttcttttca 312  Q
    ||| |||||||| ||||| ||||| |||||||||||||| ||||| |||||| ||| |||| |   ||||||||||| |||||| |||| | || |||||    
T  6572444 gcttgatcgtctaaaacatgaggtatatgaagtagatcaattgttggatgagattgctacaaactcacaacgaaagatcaaggtgcaacgcatcctttca 6572543  T
Q  313 gctttcactaatcgatttgaatctagga 340  Q
     |||| |||||||||| |||| ||||||    
T  6572544 actttgactaatcgatatgaacctagga 6572571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 12953 - 13009
Alignment:
Q  127 aaacttgaaatcacactgaattctatcaatcaattgttggatgatgcagagacaaag 183  Q
    ||||||||||||| |||||||||||||||| ||  | |||||| |||||||||||||    
T  12953 aaacttgaaatcaaactgaattctatcaatgaagagctggatgttgcagagacaaag 13009  T

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