View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_79 (Length: 339)
Name: NF10092A_low_79
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_79 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 45684186 - 45683998
Alignment:
| Q |
9 |
tggtgttgctgtgaaactggtaatcccttgataaaattgtttaccaactcatcctttgatttaatgtattctataatatttatcagacataaatatccat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45684186 |
tggtgttgctgtgaaactggtaatcccttgataaaattgtttaccaactcatcctttgatctaatgtattctataatatttatcagacataaatatccat |
45684087 |
T |
|
| Q |
109 |
cgctttgtgc-ttttgatatttttgctctcacttttgaacctatttagtcttcgcacctgcannnnnnnnggttactatttatggaatc |
196 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
45684086 |
cgctttgtgctttttgatatttttgctctcacttttgaacctatttagtcttcgcgcctgcattttttttggttactatttatggaatc |
45683998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 45683917 - 45683800
Alignment:
| Q |
217 |
cacttcgatgttgtttccatcgactttcatgtgctaattagaaacatttgttgtaatcttcttggcaggcggactctgaagtgcatatacattggaaagg |
316 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45683917 |
cacttagatgttgtttccatcgactttcatgtgctaatcagaaacgtttgttgtaatcttcttggcaggcggactctgaagtgcatatacattggaaagg |
45683818 |
T |
|
| Q |
317 |
tgctgctgagatagttct |
334 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
45683817 |
tgctgctgagatagttct |
45683800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 16691130 - 16691183
Alignment:
| Q |
281 |
gcaggcggactctgaagtgcatatacattggaaaggtgctgctgagatagttct |
334 |
Q |
| |
|
|||||| |||||||| || |||||||||||||||||||||||||| || ||||| |
|
|
| T |
16691130 |
gcaggctgactctgatgttcatatacattggaaaggtgctgctgaaattgttct |
16691183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 1443415 - 1443470
Alignment:
| Q |
279 |
tggcaggcggactctgaagtgcatatacattggaaaggtgctgctgagatagttct |
334 |
Q |
| |
|
||||||| |||||||| |||||||||||| |||||||| ||||| || |||||||| |
|
|
| T |
1443415 |
tggcaggtggactctggagtgcatatacactggaaaggagctgcagaaatagttct |
1443470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University