View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_8 (Length: 465)
Name: NF10092A_low_8
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 23 - 453
Target Start/End: Original strand, 15250238 - 15250673
Alignment:
| Q |
23 |
atgatttgcaacgtgttgtgttgtttgggggacctggtggattctgtggtctttgaaacatgtggttgtagatgatattggtcagaatgactttaattta |
122 |
Q |
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| T |
15250238 |
atgatttgcaacgtgttgtgttgtttggtggacctggtggattctgtggtctttaaaacatgtggttgtagatgatattggtcagaattactttaattta |
15250337 |
T |
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| Q |
123 |
ataaatgtatcatgggttctattttgtttcaaagtgatgatagttaatattat----ttactgttagcatgatgcactaaaaagttaaaacaacactaaa |
218 |
Q |
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| T |
15250338 |
ataaatgtgtcatgggttctattttgtttcaaagtgat---agttaatattatttatttactgttagcatgatgcactaaaaagttaaaacaacgctaaa |
15250434 |
T |
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| Q |
219 |
ctcaaaacacgaaaagagagaagatttgggagagcagcttgttgaagaatggctggggtgtctcgaacaccaaaagacattggactaacatcaaaatgac |
318 |
Q |
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| T |
15250435 |
ctcaaagcacgaaaagagagaagatttgggagagcagcttgttgaagaatggctggggtgcctcgaacaccaaaagacattggactaacatcaaaatgac |
15250534 |
T |
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| Q |
319 |
attctaggccccaaacaagaaactaaaaacctctagaaaatacaatacaagtggcatccgtcaacaaaaca----atcgaaatcaaattcaaagaaaatn |
414 |
Q |
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| T |
15250535 |
attctaggcaccaaacaagaaactaaaaacctctagaaaatacaatacaagtggcatccgtcaacaaaacaatatatcgaagtcaaattcaaagaaaata |
15250634 |
T |
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| Q |
415 |
nnnnnnnnttaatacttgtatcaaaactcaaactatatt |
453 |
Q |
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| T |
15250635 |
aaaaaaatttaatacttgtatccaaactcaaactatatt |
15250673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 15231637 - 15231677
Alignment:
| Q |
284 |
aacaccaaaagacattggactaacatcaaaatgacattcta |
324 |
Q |
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| T |
15231637 |
aacaccaaaagacattggattaatatcaaaatcacattcta |
15231677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 9378470 - 9378533
Alignment:
| Q |
326 |
gccccaaacaagaaactaaaaacctctagaaaatacaatacaagtggcatccgtcaacaaaaca |
389 |
Q |
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| T |
9378470 |
gccccacacaaaaaactagaaacctctagaaaaatcattacaagtggtatctgtcaacaaaaca |
9378533 |
T |
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