View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_82 (Length: 334)
Name: NF10092A_low_82
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_82 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 15577487 - 15577164
Alignment:
| Q |
8 |
ggctggttcctagttcaagcagttggtaactatctgccttaatttttaagtgaaagaagccactggaatatccactcatatctgacctgtactaatttga |
107 |
Q |
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| T |
15577487 |
ggctggttcctagttcaagcagttggtaactatctaccttaatttttaagtgaaagaagccactggaatatccactcatatctgacctgtactaatttga |
15577388 |
T |
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| Q |
108 |
gatggtgagatataaatggaaagctctttgagtgcaaaccatacgttaagtagttaactagcaaaacatagccagaggtcaaaattgggaagctagacaa |
207 |
Q |
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| T |
15577387 |
gatggtgagatataaatggaaagctctttgagtgcaaaccatacgttaagtagttaactagcaaaacatagtcagaggtcaaaattgggaagctagacaa |
15577288 |
T |
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| Q |
208 |
ctgtcaaaatatacga--tagctgctgttatctttatctaagaaatcttgctagtaaggccacaaaggttttccgtttgctatagctactgaatatgcga |
305 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15577287 |
ctgtcaaaatatacgatttagctgctgttatctttatctaagaaatcttactagtgaggccacaaaggttttccgtttgctatagctactgaatatgcga |
15577188 |
T |
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| Q |
306 |
tctacaaactgtcaattagaaact |
329 |
Q |
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||| |||||||||||||||||||| |
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| T |
15577187 |
tctgcaaactgtcaattagaaact |
15577164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 8337108 - 8337169
Alignment:
| Q |
8 |
ggctggttcctagttcaagcagttggtaactatctgccttaatttttaagtgaaagaagccac |
70 |
Q |
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|||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
8337108 |
ggctggttcctagttcaaccagttggtaactatctacctt-atttttaagtgaaagaagccac |
8337169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 329
Target Start/End: Original strand, 8337294 - 8337403
Alignment:
| Q |
224 |
tagctgctgttatctttatctaagaaatc-ttgctagtaaggccacaaaggttttccgtttgcta-tagctactgaatat--gcgatctacaaactgtca |
319 |
Q |
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||||| || |||||||||||||||||||| || ||||| |||||||||||||||||| ||||| | |||||||||||| | |||||| |||||||| || |
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| T |
8337294 |
tagctcctattatctttatctaagaaatctttactagtgaggccacaaaggttttccatttgcgagtagctactgaatctgcgcgatcaacaaactgcca |
8337393 |
T |
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| Q |
320 |
attagaaact |
329 |
Q |
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|||||||||| |
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| T |
8337394 |
attagaaact |
8337403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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