View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_83 (Length: 333)
Name: NF10092A_low_83
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_83 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 41928871 - 41928550
Alignment:
| Q |
1 |
atcaaagcctaaattttgcatagtagataacaaatcgtcagcagtaattgttggtctacaatcgaacttgcaataatggttagcctcagcggtaacaaag |
100 |
Q |
| |
|
||||||||| || ||||||||||||| ||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41928871 |
atcaaagcccaatttttgcatagtagctaacaaatcttcagcagtaattgttgttctacaatctaacttgcaataatggttagcctcagcggtaacaaag |
41928772 |
T |
|
| Q |
101 |
ctaatgaattcagctgcatatttcaccataatttccttgctttcatcggttatctttgcatgtcttggtagagcttttttcatcaatctatgcacattcg |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41928771 |
ctaataaattcagctgcatatttcaccataatttccttgctttcatcggttatctttgcatgtcttggtagagcttttttcatcaatctatgcacattcg |
41928672 |
T |
|
| Q |
201 |
caatgggaaaggctcttgaaaattcttcttgcaccctcgaatcagctggttgcactccatcctctaacatcaccacaatattag------ttatatataa |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
41928671 |
caatgggaaaggctcttgaaaattcttcttgcaccctcgaactagctggttgcactccatcctctaacatcaccacaatagtagttattattatatataa |
41928572 |
T |
|
| Q |
295 |
ttggcgtgaagcagcagttata |
316 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
41928571 |
ttggcgtgaagcagcagttata |
41928550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 141 - 314
Target Start/End: Complemental strand, 41910792 - 41910619
Alignment:
| Q |
141 |
tttcatcggttatctttgcatgtcttggtagagcttttttcatcaatctatgcacattcgcaatgggaaaggctcttgaaaattcttcttgcaccctcga |
240 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41910792 |
tttcatcggttatctttgcatgttgaggaagagcttttttcatcaatctatgcacattggcaatgggaaaggctcttgaaaattcttcatgcaccctcga |
41910693 |
T |
|
| Q |
241 |
atcagctggttgcactccatcctctaacatcaccacaatattagttatatataattggcgtgaagcagcagtta |
314 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || ||||| |
|
|
| T |
41910692 |
actagctggttgcactccatcctctaacatcaccacaatagtagttatttataattggcgtgaagtagtagtta |
41910619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 41911131 - 41910977
Alignment:
| Q |
1 |
atcaaagcctaaattttgcatagtagataacaaatcgtcagcagtaattgttggtctacaatcgaacttgcaataatgg--ttagcctcagcggtaacaa |
98 |
Q |
| |
|
|||||| || || ||||||||| || ||||||||| |||||||||||||||| ||| |||| || |||||||||||| || | |||||| ||||||| |
|
|
| T |
41911131 |
atcaaaacccaatttttgcatactaattaacaaatcttcagcagtaattgttgtcctataatctaaattgcaataatggttttggtctcagcagtaacaa |
41911032 |
T |
|
| Q |
99 |
agctaatgaattcagctgcatatttcaccataatttccttgctttcatcggttatcttt |
157 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41911031 |
agctaatgaattcagctg----gttcaccataatttccttgctttcatcggttatcttt |
41910977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 41938101 - 41938039
Alignment:
| Q |
1 |
atcaaagcctaaattttgcatagtagataacaaatcgtcagcagtaattgttggtctacaatc |
63 |
Q |
| |
|
||||||||| || ||||||||||||| ||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
41938101 |
atcaaagcccaatttttgcatagtagctaacaaatcttcagcagtaattgttgttctacaatc |
41938039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University