View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_87 (Length: 330)

Name: NF10092A_low_87
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_87
NF10092A_low_87
[»] chr4 (10 HSPs)
chr4 (178-330)||(37180002-37180154)
chr4 (178-330)||(37181583-37181735)
chr4 (178-330)||(37189700-37189852)
chr4 (182-326)||(37187689-37187833)
chr4 (19-115)||(37180220-37180316)
chr4 (19-115)||(37189538-37189634)
chr4 (182-230)||(38704220-38704268)
chr4 (43-115)||(37181445-37181517)
chr4 (27-114)||(37187901-37187988)
chr4 (43-115)||(38704293-38704369)
[»] chr5 (2 HSPs)
chr5 (200-318)||(27096701-27096816)
chr5 (200-318)||(27103004-27103119)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 178 - 330
Target Start/End: Complemental strand, 37180154 - 37180002
Alignment:
Q  178 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180154 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37180055  T
Q  278 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcac 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180054 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcac 37180002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 178 - 330
Target Start/End: Original strand, 37181583 - 37181735
Alignment:
Q  178 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181583 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37181682  T
Q  278 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcac 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181683 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcac 37181735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 178 - 330
Target Start/End: Original strand, 37189700 - 37189852
Alignment:
Q  178 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189700 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37189799  T
Q  278 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcac 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189800 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcac 37189852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 182 - 326
Target Start/End: Complemental strand, 37187833 - 37187689
Alignment:
Q  182 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaa 281  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  37187833 ccttcaattccaaatatgcctcagggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaa 37187734  T
Q  282 atattccaacaattccatctctcaacattccaccattgccagcag 326  Q
    || ||||||||||||||||||||||||||||||||||||||||||    
T  37187733 attttccaacaattccatctctcaacattccaccattgccagcag 37187689  T

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Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 37180316 - 37180220
Alignment:
Q  19 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37180316 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg 37180220  T

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Target: chr4; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 37189538 - 37189634
Alignment:
Q  19 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37189538 catcaaactatcaatggcaatattcaaatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg 37189634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 38704268 - 38704220
Alignment:
Q  182 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38704268 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta 38704220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 37181445 - 37181517
Alignment:
Q  43 caaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 115  Q
    ||||||||||||  ||||||||||||| ||||| ||||| |||| |||||||||||||||||| |||||||||    
T  37181445 caaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcctagaagctcgccatcttttg 37181517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 37187988 - 37187901
Alignment:
Q  27 tatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatctttt 114  Q
    |||||||||||  |  |||||||||||||| | |||||||||| |||||||| || |||| |||||||||||||||||| ||||||||    
T  37187988 tatcaatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatctttt 37187901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 38704369 - 38704293
Alignment:
Q  43 caaatccttcatcacaactt----tacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 115  Q
    ||||||||| ||||||||||    ||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||    
T  38704369 caaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttg 38704293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 200 - 318
Target Start/End: Original strand, 27096701 - 27096816
Alignment:
Q  200 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat 299  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||  ||||||| ||   ||||||| ||||||    
T  27096701 cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat 27096797  T
Q  300 ctctcaacattccaccatt 318  Q
    |||||||| ||||||||||    
T  27096798 ctctcaactttccaccatt 27096816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 318
Target Start/End: Original strand, 27103004 - 27103119
Alignment:
Q  200 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat 299  Q
    |||||||| ||| |||||||||||||||| ||||||||  ||||||| |||||||||||||||||||| ||  |||| || ||   ||||||| ||||||    
T  27103004 cctcaaggtaatgttcctccattgcctaccatcccttcagtgcctaagctcactatgccaccacttcctagcattccaaccaa---tccaacacttccat 27103100  T
Q  300 ctctcaacattccaccatt 318  Q
    |||||||| ||||||||||    
T  27103101 ctctcaactttccaccatt 27103119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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