View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_9 (Length: 465)
Name: NF10092A_low_9
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_9 |
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| [»] scaffold0110 (4 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 419; Significance: 0; HSPs: 4)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 460
Target Start/End: Complemental strand, 13506 - 13061
Alignment:
| Q |
17 |
atcaaatcgagtttgacgaaatcacagttgcaccttgtgattttgttgaagcttccaaatgtagtttttggcgaaatcattatggcacatcgtgattgtg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13506 |
atcaaatcgagtttgacgaaatcacagttgcaccttgtgattttgttgaagcttcaaaatgtagtttttggcgaaatcactatggcacatcgtgattgtg |
13407 |
T |
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| Q |
117 |
acaaactcaactatgacacatcgtgattctagcaaactcacggataatctaaacacac--ttaatctaaaaatgaatcaaaatactaaaattacctggta |
214 |
Q |
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| T |
13406 |
acaaactcaactatgacacatcgtgattctagcaaactcatggataatctaaacacacacttaatctaaaaatgaatcaaaatactaaaattacctggta |
13307 |
T |
|
| Q |
215 |
tttctctctatatctttgagcagcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttcca |
314 |
Q |
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| T |
13306 |
tttctgtctatatctttgagcagcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttcca |
13207 |
T |
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| Q |
315 |
tattcttttgaacaccttccaggggcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgt |
414 |
Q |
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| T |
13206 |
tattcttttgaacaccttccaggggcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgt |
13107 |
T |
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| Q |
415 |
ctccaaatgttttgaaacaaaaatctgcataatccgcaaaatcttt |
460 |
Q |
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| T |
13106 |
ctccaaatgttttgaaacaaaaatctgcataatccgcaaaatcttt |
13061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 460
Target Start/End: Complemental strand, 21243 - 20798
Alignment:
| Q |
17 |
atcaaatcgagtttgacgaaatcacagttgcaccttgtgattttgttgaagcttccaaatgtagtttttggcgaaatcattatggcacatcgtgattgtg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21243 |
atcaaatcgagtttgacgaaatcacagttgcaccttgtgattttgttgaagcttcaaaatgtagtttttggcgaaatcactatggcacatcgtgattgtg |
21144 |
T |
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| Q |
117 |
acaaactcaactatgacacatcgtgattctagcaaactcacggataatctaaacacac--ttaatctaaaaatgaatcaaaatactaaaattacctggta |
214 |
Q |
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| T |
21143 |
acaaactcaactatgacacatcgtgattctagcaaactcatggataatctaaacacacacttaatctaaaaatgaatcaaaatactaaaattacctggta |
21044 |
T |
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| Q |
215 |
tttctctctatatctttgagcagcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttcca |
314 |
Q |
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| T |
21043 |
tttctgtctatatctttgagcagcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttcca |
20944 |
T |
|
| Q |
315 |
tattcttttgaacaccttccaggggcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgt |
414 |
Q |
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| T |
20943 |
tattcttttgaacaccttccaggggcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgt |
20844 |
T |
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| Q |
415 |
ctccaaatgttttgaaacaaaaatctgcataatccgcaaaatcttt |
460 |
Q |
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| T |
20843 |
ctccaaatgttttgaaacaaaaatctgcataatccgcaaaatcttt |
20798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 126 - 460
Target Start/End: Complemental strand, 30254 - 29918
Alignment:
| Q |
126 |
actatgacacatcgtgattctagcaaactcacggataatctaaacaca--cttaatctaaaaatgaatcaaaatactaaaattacctggtatttctctct |
223 |
Q |
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|||||| |||||| ||| ||| ||||||||| | ||||| ||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
30254 |
actatggcacatcatgactctgacaaactcactgctaatccaaacacatacttaatctaaaaacgaatcaaaatactaatattacctggtatttctctct |
30155 |
T |
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| Q |
224 |
atatctttgagcagcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattctttt |
323 |
Q |
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| T |
30154 |
atatctttgagcagcagcagcatgtgacaatatcaaattgtgagctacagtataaggctcagttcctgaatttccagctgtacaatttccatattctttt |
30055 |
T |
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| Q |
324 |
gaacaccttccaggggcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatg |
423 |
Q |
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| T |
30054 |
gaacatcttccaggggcaaaaaagccattatcataaccaagtgcagcaacaactcttggttcattgaaggtcatccaattcttaactctgtctccaaatg |
29955 |
T |
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| Q |
424 |
ttttgaaacaaaaatctgcataatccgcaaaatcttt |
460 |
Q |
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| T |
29954 |
tcttaaaacaaaaatctgcataatccgcaaaatcttt |
29918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 30332 - 30224
Alignment:
| Q |
17 |
atcaaatcgagtttgacgaaatcacagttgcaccttgtgattttgttgaagcttccaaatgtagtttttggcgaaatcattatggcacatcgtgattgtg |
116 |
Q |
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|||| ||| ||||||||||||||||||||||||| ||||| |||||||||||| | || ||||||||||| | |||||| ||||||||||| ||| | || |
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| T |
30332 |
atcacatcaagtttgacgaaatcacagttgcaccatgtgactttgttgaagctgcaaagtgtagtttttgcctaaatcactatggcacatcatgactctg |
30233 |
T |
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| Q |
117 |
acaaactca |
125 |
Q |
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||||||||| |
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| T |
30232 |
acaaactca |
30224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 31639108 - 31639059
Alignment:
| Q |
381 |
ggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaa |
430 |
Q |
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||||||||||| || ||||||| |||||||||||||||||| | |||||| |
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| T |
31639108 |
ggttcattgaaggtaatccagtgcttaactctgtctccaaaagctttgaa |
31639059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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