View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_91 (Length: 328)
Name: NF10092A_low_91
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_91 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 4398381 - 4398069
Alignment:
| Q |
11 |
tgaaaagggcaagttggatattcacgaatcatgtgaaggctctaacaaactgtccgtgtgatctaaacttcactttgcagcatagttttctatcaaagca |
110 |
Q |
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| T |
4398381 |
tgaaaagggcaagttggatattcacgaatcatgtgaaggctctaacaaactgtccgtgtgatctaaacttcactttgcagcatagttttctatcaaagca |
4398282 |
T |
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| Q |
111 |
aataaagtaagggtaccaaaatgagtggacaatggaccaaccatattaatcattcaatnnnnnnnngattaattataaaatatgtatactagttggatat |
210 |
Q |
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| T |
4398281 |
aataaagtaagggtaccaaaatgagtggacaatggaccaaccatattaatcattcaataaaaaaaagattaattataaaatatgtatactagttggatat |
4398182 |
T |
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| Q |
211 |
tattgtggtccaaattcaatccgatttgaaaattcacatatatagatagattgggtcaatttattggctcaaaaatattttaatttttataattggtcat |
310 |
Q |
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| T |
4398181 |
tattgtggtccaaattcaatccgatttgaaaattcacatatatagatagattgggtcaatttattggctcaaaaatattttaatttttataattggtcat |
4398082 |
T |
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| Q |
311 |
ctaagttatattt |
323 |
Q |
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||||||||||||| |
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| T |
4398081 |
ctaagttatattt |
4398069 |
T |
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