View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_93 (Length: 325)
Name: NF10092A_low_93
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_93 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43410771 - 43411010
Alignment:
| Q |
1 |
acttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcatctcacac |
100 |
Q |
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| T |
43410771 |
acttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcatctcacac |
43410870 |
T |
|
| Q |
101 |
acgtaccattagactctctctttttcaagctt-ccctctcaatcttccaaacactttccgcaa---cagcagcagcagtccatcctc----ctagctagc |
192 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
43410871 |
acgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctcctagctagctagc |
43410970 |
T |
|
| Q |
193 |
ttacaacttc---tcatctgaatgtgttgtgtctgtctgt |
229 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
43410971 |
ttacaacttctgatcatctgaatgtgttgtgtctgtctgt |
43411010 |
T |
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