View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_94 (Length: 320)
Name: NF10092A_low_94
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_94 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 21228835 - 21228591
Alignment:
| Q |
13 |
aatatgacccagctaattgactcttgagacaaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccaaccatccatttt |
112 |
Q |
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| T |
21228835 |
aatatgacccagctaattgactcttgagacaaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccatccatccatttt |
21228736 |
T |
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| Q |
113 |
gaaagttcttataaggtgtttcaagtttacaatattccattcaaatcaattactatataatactttatcagattacttgattttaacaatagatgtttga |
212 |
Q |
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| T |
21228735 |
gaaagttcttataaggtgtttcaagtttacaatattccattcaaatcaattactatataatactttatcagattacttgattttaactatagatgtttga |
21228636 |
T |
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| Q |
213 |
tatataaacaaacaaacatagagaggtttgtgtttggacatgtaa |
257 |
Q |
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| T |
21228635 |
tatataaacaaacaaacatagtgaggtttgtgtttggacaagtaa |
21228591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 299
Target Start/End: Complemental strand, 21228566 - 21228523
Alignment:
| Q |
256 |
aaaatattttctgtaagaatgttggtgacatcgcagctcattcc |
299 |
Q |
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| T |
21228566 |
aaaatattttctgtaagaatgttggtgacatcgcagctcattcc |
21228523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 10035758 - 10035699
Alignment:
| Q |
42 |
caaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccaa |
101 |
Q |
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| T |
10035758 |
caaacttttacattacaccagcgaataataaattgtagaatgcaaaccgaaccaatccaa |
10035699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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