View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092_high_1 (Length: 393)

Name: NF10092_high_1
Description: NF10092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092_high_1
NF10092_high_1
[»] chr7 (3 HSPs)
chr7 (5-379)||(22972355-22972729)
chr7 (5-379)||(22964111-22964485)
chr7 (238-286)||(25273683-25273731)
[»] chr8 (4 HSPs)
chr8 (5-379)||(12585928-12586302)
chr8 (5-219)||(26571897-26572111)
chr8 (250-379)||(26572110-26572243)
chr8 (229-282)||(32500507-32500560)
[»] chr3 (2 HSPs)
chr3 (5-379)||(49600965-49601339)
chr3 (103-267)||(8354680-8354844)
[»] chr2 (3 HSPs)
chr2 (5-379)||(22318764-22319129)
chr2 (103-267)||(1979372-1979536)
chr2 (229-282)||(7592822-7592875)
[»] chr6 (1 HSPs)
chr6 (5-82)||(6901341-6901418)
[»] chr5 (1 HSPs)
chr5 (103-267)||(14460682-14460846)
[»] chr1 (1 HSPs)
chr1 (244-284)||(29095769-29095809)


Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 5 - 379
Target Start/End: Complemental strand, 22972729 - 22972355
Alignment:
Q  5 aaatcaccaatcccctctaattcataaaatgcatcttcagagcatacatctacaatataattttcaagttgagaatctagttccaaaagttgaacatgag 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22972729 aaatcaccaatcccctctaattcataaaatgcatcttcagagcatacatctacaatataattttcaagttgagaatctagttccaaaagttgaacaggag 22972630  T
Q  105 aaaattctgaaggataaaattcagctaaacgaatcaaattcttcttatcaaatgcaaaaaagctatctcttgggtttaaacaagctacacaaagaagcaa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22972629 aaaattctgaaggataaaattcagctaaacgaatcaaattcttcttatcaaatgcagaaaagctatctcttgggtttaaacaagctacacaaagaagcaa 22972530  T
Q  205 ctcagtattcacttctgaaaaacgattattcaactcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaagtaatgtaagttagaaact 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22972529 ctcagtattcacttctgaaaaacgattattcaactcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaagtaatgtaagttagaaact 22972430  T
Q  305 ttctctgagttgcgttttgactttttaaatgtttgataggtatcatccatatttgggatgacaacttcatgatgt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22972429 ttctctgagttgcgttttgactttttaaatgtttgataggtatcatccatatttgggatgacaacttcatgatgt 22972355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 5 - 379
Target Start/End: Complemental strand, 22964485 - 22964111
Alignment:
Q  5 aaatcaccaatcccctctaattcataaaatgcatcttcagagcatacatctacaatataattttcaagttgagaatctagttccaaaagttgaacatgag 104  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||     
T  22964485 aaatcaccaatcccctctaattcataaaatgcattttcagagcatacatctacaatataattttcaagttgagaatctagttccaatagttgaacaggac 22964386  T
Q  105 aaaattctgaaggataaaattcagctaaacgaatcaaattcttcttatcaaatgcaaaaaagctatctcttgggtttaaacaagctacacaaagaagcaa 204  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  22964385 aaaattctgaaggataaaatttagctaaacgaatcaaattcttcttatcaaatgcagaaaagctatctcttgggtttaaacaggctacacaaagaagcaa 22964286  T
Q  205 ctcagtattcacttctgaaaaacgattattcaactcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaagtaatgtaagttagaaact 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22964285 ctcagtattcacttctgaaaaacgattattcaactcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaagtaatgtaagttagaaact 22964186  T
Q  305 ttctctgagttgcgttttgactttttaaatgtttgataggtatcatccatatttgggatgacaacttcatgatgt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22964185 ttctctgagttgcgttttgactttttaaatgtttgataggtatcatccatatttgggatgacaacttcatgatgt 22964111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 25273683 - 25273731
Alignment:
Q  238 ctcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaag 286  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  25273683 ctcttaaagttgtcgatcaatcacttgatagaacaattgaacttgaaag 25273731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 5 - 379
Target Start/End: Original strand, 12585928 - 12586302
Alignment:
Q  5 aaatcaccaatcccctctaattcataaaatgcatcttcagagcatacatctacaatataattttcaagttgagaatctagttccaaaagttgaacatgag 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12585928 aaatcaccaatcccctctaattcataaaatgcatcttcagagcatacatctacaatataattttcaagttgagaatctagttccaaaagttgaacaggag 12586027  T
Q  105 aaaattctgaaggataaaattcagctaaacgaatcaaattcttcttatcaaatgcaaaaaagctatctcttgggtttaaacaagctacacaaagaagcaa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  12586028 aaaattctgaaggataaaattcagctaaacgaatcaaattcttcttatcaaatgcagaaaaactatctcttgggtttaaacaagctacacaaagaagcaa 12586127  T
Q  205 ctcagtattcacttctgaaaaacgattattcaactcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaagtaatgtaagttagaaact 304  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12586128 ctcagtattcacttctgaaaaatgattattcaactcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaagtaatgtaagttagaaact 12586227  T
Q  305 ttctctgagttgcgttttgactttttaaatgtttgataggtatcatccatatttgggatgacaacttcatgatgt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12586228 ttctctgagttgcgttttgactttttaaatgtttgataggtatcatccatatttgggatgacaacttcatgatgt 12586302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 26571897 - 26572111
Alignment:
Q  5 aaatcaccaatcccctctaattcataaaatgcatcttcagagcatacatctacaatataattttcaagttgagaatctagttccaaaagttgaacatgag 104  Q
    ||||||| ||| || ||||||||  |||||||||||||||||||||||||||  | |||| ||||||| ||||||| ||||| ||| ||||||||| |||    
T  26571897 aaatcactaattccatctaattccaaaaatgcatcttcagagcatacatctaagaaataactttcaagctgagaatttagtttcaatagttgaacaggag 26571996  T
Q  105 aaaattctgaaggataaaattcagctaaacgaatcaaattcttcttatcaaatgcaaaaaagctatctcttgggtttaaacaagctacacaaagaagcaa 204  Q
    |||||||| || ||||||||| || ||||||||||||  ||| ||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||    
T  26571997 aaaattctaaaagataaaattgagttaaacgaatcaacctctccttatcaaatgcagaaaagttgtctcttgggcttaaacaagctacacaaagaagcaa 26572096  T
Q  205 ctcagtattcacttc 219  Q
    |||||||||||||||    
T  26572097 ctcagtattcacttc 26572111  T

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Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 250 - 379
Target Start/End: Original strand, 26572110 - 26572243
Alignment:
Q  250 tcgatcaatcacttgatagaagaattgaacttgaaagtaatgtaagtta----gaaactttctctgagttgcgttttgactttttaaatgtttgataggt 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    |||| |||||| |||||| | ||||||||||||||||||||||||||    
T  26572110 tcgatcaatcacttgatagaagaattgaacttgaaagtaatgtaagttaattagaaaatttctccgagttgtgctttgactttttaaatgtttgataggt 26572209  T
Q  346 atcatccatatttgggatgacaacttcatgatgt 379  Q
    ||||||||||||||| ||||||||||||||||||    
T  26572210 atcatccatatttggaatgacaacttcatgatgt 26572243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 32500560 - 32500507
Alignment:
Q  229 attattcaactcttgaagttgtcgatcaatcacttgatagaagaattgaacttg 282  Q
    |||||| ||||||||||||| | |||||| |||||||||||| |||||||||||    
T  32500560 attattgaactcttgaagtttttgatcaaccacttgatagaacaattgaacttg 32500507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 5 - 379
Target Start/End: Original strand, 49600965 - 49601339
Alignment:
Q  5 aaatcaccaatcccctctaattcataaaatgcatcttcagagcatacatctacaatataattttcaagttgagaatctagttccaaaagttgaacatgag 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  49600965 aaatcaccaatcccctctaattcataaaatgcatcttcagagcatacatctacaatataattttcaagttgagaatctagttccaatagttgaacaggag 49601064  T
Q  105 aaaattctgaaggataaaattcagctaaacgaatcaaattcttcttatcaaatgcaaaaaagctatctcttgggtttaaacaagctacacaaagaagcaa 204  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  49601065 aaaaatctgaaggagaaaattcagctaaacgaatcaaattcttcttatcaaatgcagaaaagctatctcttaggtttaaacaagctacacaaagaagcaa 49601164  T
Q  205 ctcagtattcacttctgaaaaacgattattcaactcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaagtaatgtaagttagaaact 304  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49601165 ctcagtattcacttctgaagaacgattattcaactcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaagtaatgtaagttagaaact 49601264  T
Q  305 ttctctgagttgcgttttgactttttaaatgtttgataggtatcatccatatttgggatgacaacttcatgatgt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  49601265 ttctctgagttgcgttttgactttttaaatgtttgataggtatcatccatatctgggatgacaacttcatgatgt 49601339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 267
Target Start/End: Original strand, 8354680 - 8354844
Alignment:
Q  103 agaaaattctgaaggataaaattcagctaaacgaatcaaattcttcttatcaaatgcaaaaaagctatctcttgggtttaaacaagctacacaaagaagc 202  Q
    |||||||||| | |||||||||  ||| |||  || ||| |||| ||| ||||| ||||||||   ||||||||| ||||| |  |||||||||| ||||    
T  8354680 agaaaattcttatggataaaatcgagccaaattaaccaacttctccttgtcaaaggcaaaaaatgaatctcttggatttaagcttgctacacaaataagc 8354779  T
Q  203 aactcagtattcacttctgaaaaacgattattcaactcttgaagttgtcgatcaatcacttgata 267  Q
    || ||| || |||| ||    || |||||||| | |||||||||||||| ||||||||| |||||    
T  8354780 aattcactactcacctcgatgaatcgattattaagctcttgaagttgtctatcaatcacatgata 8354844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 5 - 379
Target Start/End: Original strand, 22318764 - 22319129
Alignment:
Q  5 aaatcaccaatcccctctaattcataaaatgcatcttcagagcatacatctacaatataattttcaagttgagaatctagttccaaaagttgaacatgag 104  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |     ||| |||    
T  22318764 aaatcaccaatcccctctaattcaaaaaatgcatcttcagagcatacatctacaatataattttcaagttgagaatctagtgccaata-----acaggag 22318858  T
Q  105 aaaattctgaaggataaaattcagctaaacgaatcaaattcttcttatcaaatgcaaaaaagctatctcttgggtttaaacaagctacacaaagaagcaa 204  Q
    |||||| |||||||||||||| ||||||||||||||| |||| ||||    ||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  22318859 aaaattttgaaggataaaattgagctaaacgaatcaacttctgctta----atgcagaaaagctatctcttgggcttaaacaagctacacaaagaagcaa 22318954  T
Q  205 ctcagtattcacttctgaaaaacgattattcaactcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaagtaatgtaagttagaaact 304  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22318955 ctcagtattcacttctgaaaaacgattatttaactcttcaagttgtcgatcaatcacttgatagaagaattgaacttgaaagtaatgtaagttaaaaact 22319054  T
Q  305 ttctctgagttgcgttttgactttttaaatgtttgataggtatcatccatatttgggatgacaacttcatgatgt 379  Q
    ||||| |||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22319055 ttctccgagttgcgctttgacttttcaaatgtttgattggtatcatccatatttgggatgacaacttcatgatgt 22319129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 267
Target Start/End: Complemental strand, 1979536 - 1979372
Alignment:
Q  103 agaaaattctgaaggataaaattcagctaaacgaatcaaattcttcttatcaaatgcaaaaaagctatctcttgggtttaaacaagctacacaaagaagc 202  Q
    |||||||||||| |||||||||  ||| |||  || ||| |||| ||| ||||||||||||||   ||||||||| ||||| |  |||||||||| ||||    
T  1979536 agaaaattctgatggataaaatcgagccaaattaaccaacttctccttgtcaaatgcaaaaaatgaatctcttggatttaagcttgctacacaaataagc 1979437  T
Q  203 aactcagtattcacttctgaaaaacgattattcaactcttgaagttgtcgatcaatcacttgata 267  Q
    || ||| || |||| || |  || |||||||| | |||||||||||||| ||||||||| |||||    
T  1979436 aattcactactcacctcggtgaatcgattattaagctcttgaagttgtctatcaatcacatgata 1979372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 7592822 - 7592875
Alignment:
Q  229 attattcaactcttgaagttgtcgatcaatcacttgatagaagaattgaacttg 282  Q
    |||||| ||||||||||||| | |||||| ||| |||||||| |||||||||||    
T  7592822 attattgaactcttgaagtttttgatcaaccacatgatagaacaattgaacttg 7592875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 6901418 - 6901341
Alignment:
Q  5 aaatcaccaatcccctctaattcataaaatgcatcttcagagcatacatctacaatataattttcaagttgagaatct 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6901418 aaatcaccaatcccctctaattcataaaatgcatcttcagagcatacatctacaatataattttcaagttgagaatct 6901341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 267
Target Start/End: Original strand, 14460682 - 14460846
Alignment:
Q  103 agaaaattctgaaggataaaattcagctaaacgaatcaaattcttcttatcaaatgcaaaaaagctatctcttgggtttaaacaagctacacaaagaagc 202  Q
    |||||||||||| |||||||||  ||| |||  || ||| |||| ||| ||||||||||||||   ||||||||| ||||| |  |||||||||| ||||    
T  14460682 agaaaattctgatggataaaatcgagccaaattaaccaacttctccttgtcaaatgcaaaaaatgaatctcttggatttaagcttgctacacaaataagc 14460781  T
Q  203 aactcagtattcacttctgaaaaacgattattcaactcttgaagttgtcgatcaatcacttgata 267  Q
    || ||| || |||| || |  || |||||||| | |||||||||||||| ||||||||| |||||    
T  14460782 aattcactactcacctcggtgaatcgattattaagctcttgaagttgtctatcaatcacatgata 14460846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 29095809 - 29095769
Alignment:
Q  244 aagttgtcgatcaatcacttgatagaagaattgaacttgaa 284  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  29095809 aagttgtcgatcaatcacttgatagaacaattgaacttgaa 29095769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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