View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092_high_3 (Length: 365)

Name: NF10092_high_3
Description: NF10092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092_high_3
NF10092_high_3
[»] chr8 (25 HSPs)
chr8 (15-349)||(38453375-38453709)
chr8 (19-178)||(38633057-38633216)
chr8 (19-189)||(39848769-39848939)
chr8 (19-110)||(34539027-34539118)
chr8 (24-116)||(39848636-39848728)
chr8 (19-111)||(34533725-34533817)
chr8 (19-111)||(38632779-38632871)
chr8 (27-102)||(39848261-39848336)
chr8 (32-120)||(34549174-34549262)
chr8 (27-111)||(38632548-38632632)
chr8 (19-110)||(38453890-38453981)
chr8 (19-111)||(34533863-34533955)
chr8 (25-111)||(34916426-34916512)
chr8 (19-111)||(34544775-34544867)
chr8 (19-111)||(39848490-39848582)
chr8 (28-110)||(38632929-38633011)
chr8 (34-111)||(34533587-34533664)
chr8 (19-102)||(34916573-34916656)
chr8 (37-96)||(36951478-36951537)
chr8 (302-349)||(38633358-38633405)
chr8 (25-111)||(34916150-34916236)
chr8 (35-102)||(39848368-39848435)
chr8 (301-347)||(39849066-39849112)
chr8 (307-343)||(36951895-36951931)
chr8 (207-258)||(38633242-38633296)
[»] chr4 (3 HSPs)
chr4 (18-293)||(44474634-44474909)
chr4 (24-91)||(44474364-44474431)
chr4 (24-111)||(44474502-44474589)
[»] chr3 (1 HSPs)
chr3 (54-257)||(7045679-7045879)


Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 38453709 - 38453375
Alignment:
Q  15 gatcatgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgac 114  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  38453709 gatcatgagttgggctaatggtgatgtttttgatggttgttggtcaaatggacttatacatggatctggagtttttagatttgcaaatggggatgtcgac 38453610  T
Q  115 attggtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggttgcatatgctcaaatggaaaagtga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38453609 attggtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggttgcatatgctcaaatggaaaagtga 38453510  T
Q  215 tagagaaaggactgatgatatggggccttcaaaatcccgatggagattgtatatgtcctgattcctcatctggtgtgattctttctgttatcgaaaggga 314  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38453509 tagagaaaagactgatgatatgaggccttcaaaatcccgatggagattgtatatgtcctgattcctcatctggtgtgattctttctgttatcgaaatgga 38453410  T
Q  315 atatatgcaaagagttctgattgtggagaaaatta 349  Q
    |||||||||||||||||||||||||||||||||||    
T  38453409 atatatgcaaagagttctgattgtggagaaaatta 38453375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 38633057 - 38633216
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacattg 118  Q
    |||| |||||||| ||||||||| ||  ||||||||||||||||||| |||||||||||||||||||||| ||||| ||| ||| |||||||||| ||||    
T  38633057 atgacttgggctactggtgatgtcttcgatggttgttggtcaaatgggcttatacatggatctggagtttatagatatgctaatggggatgtcgatattg 38633156  T
Q  119 gtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaa 178  Q
    ||||||||||||||||||  || |||| ||| |||||||||||||  ||| |||||||||    
T  38633157 gtaacttcaggagtaaacttctccatgtcaatggaaaatacacatgctcagatggaacaa 38633216  T

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Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 39848769 - 39848939
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacattg 118  Q
    |||||||||| |  ||||||||| ||  ||||||||||||||||||| ||||||||||||| |||||||| ||||| ||| ||  |||||||||| ||||    
T  39848769 atgagttgggttgttggtgatgtcttcgatggttgttggtcaaatggacttatacatggatatggagtttatagatatgctaacggggatgtcgatattg 39848868  T
Q  119 gtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggt 189  Q
    ||||||||||||||||||  || |||| ||| ||||||||||||   |||||||||||||| |||||||||    
T  39848869 gtaacttcaggagtaaacttctccatgacaatggaaaatacacacactcaaatggaacaatatacgagggt 39848939  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 34539118 - 34539027
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgt 110  Q
    |||| |||||||||||| ||||||||| ||||||||||||||||||| |||| |||||| |||||||||| ||||||||||||| |||||||    
T  34539118 atgaattgggctaatggcgatgtttttaatggttgttggtcaaatggacttagacatggttctggagtttatagatttgcaaatggggatgt 34539027  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 39848636 - 39848728
Alignment:
Q  24 ttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacat 116  Q
    |||||||||||||||||||||| ||||||||  ||||||||| |||| |||||||| |||||||| ||||||||||||| |||||||| ||||    
T  39848636 ttgggctaatggtgatgtttttgatggttgtatgtcaaatggacttagacatggatttggagtttatagatttgcaaatggggatgtctacat 39848728  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 34533817 - 34533725
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    ||||| ||||||||||||| ||||||  ||||||||||||||||||| |||| |||||||| |||||||| ||||||| ||||| ||||||||    
T  34533817 atgagatgggctaatggtgttgttttcgatggttgttggtcaaatggacttagacatggatatggagtttgtagatttacaaatggggatgtc 34533725  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 38632779 - 38632871
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    ||||||||||||| ||||||||| ||  |||||||||||||| |||| ||||||||||||| |||||||| ||||| ||||||| ||||||||    
T  38632779 atgagttgggctactggtgatgtcttcgatggttgttggtcagatggacttatacatggatttggagtttatagatctgcaaatggggatgtc 38632871  T

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Target: chr8; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 39848261 - 39848336
Alignment:
Q  27 ggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaat 102  Q
    ||||||||||||||||||| |||||||||||||||||| | || || |||||| ||||||||||||||||||||||    
T  39848261 ggctaatggtgatgtttttaatggttgttggtcaaatgactttgtatatggatatggagtttttagatttgcaaat 39848336  T

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Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 34549262 - 34549174
Alignment:
Q  32 atggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacattggt 120  Q
    |||||||||||||| ||||||||||||| ||||| |||| |||||||| |||||||| ||||||| ||||| || ||||| ||||||||    
T  34549262 atggtgatgtttttgatggttgttggtctaatggacttacacatggatatggagtttatagattttcaaatgggaatgtctacattggt 34549174  T

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Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 38632548 - 38632632
Alignment:
Q  27 ggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    ||||||||||||||||||  ||| ||||||||||||||| ||| ||||||||| |||||||||||||  ||||||| ||||||||    
T  38632548 ggctaatggtgatgttttggatgcttgttggtcaaatggacttctacatggatttggagtttttagagctgcaaatggggatgtc 38632632  T

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Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 38453981 - 38453890
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgt 110  Q
    ||||||||| || |||||||||||||| ||||||||||||||||| | ||| ||||||||| |||||||| ||||| || |||| |||||||    
T  38453981 atgagttggcctgatggtgatgtttttgatggttgttggtcaaatagacttgtacatggatatggagtttatagatctgtaaatggggatgt 38453890  T

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Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 34533955 - 34533863
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    |||| ||||| | |||||||||||||| ||||||||||||||||| | |||| | |||||| |||||||| ||||| ||||||| ||||||||    
T  34533955 atgaattgggttgatggtgatgtttttgatggttgttggtcaaatagacttaaagatggatatggagtttatagatatgcaaatggggatgtc 34533863  T

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Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 34916512 - 34916426
Alignment:
Q  25 tgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    |||||||| | |||||||||  |||||| |||||||||||| | || |||||||| |||||||| ||||||||||||| ||||||||    
T  34916512 tgggctaacgatgatgttttcgatggttattggtcaaatggacataaacatggatatggagtttatagatttgcaaatggggatgtc 34916426  T

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Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 34544867 - 34544775
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    |||| ||||| |||||||||||||||  |||| |||||||||||||| | || |||||||| |||||||| ||||||| ||||| || |||||    
T  34544867 atgaattgggttaatggtgatgttttcaatggatgttggtcaaatggacatagacatggatatggagtttatagattttcaaatgggaatgtc 34544775  T

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Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 39848490 - 39848582
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    |||||||||| || ||| ||||| || |||||||||||||||||||| |||  |||||||| |||||||| |||||  |||||| ||||||||    
T  39848490 atgagttgggatactggagatgtcttctatggttgttggtcaaatggacttgcacatggatatggagtttatagatccgcaaatggggatgtc 39848582  T

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Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 38632929 - 38633011
Alignment:
Q  28 gctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgt 110  Q
    ||||| |||||||||||| |||||| || ||||||||| |||| | |||||| |||||||| || |||||||||| |||||||    
T  38632929 gctaacggtgatgtttttgatggttatttgtcaaatggacttagatatggatttggagtttataaatttgcaaatggggatgt 38633011  T

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Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 34533664 - 34533587
Alignment:
Q  34 ggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    |||||||||||  |||||||||||| |||||| |||| ||||||||||||||||| || || ||| ||| ||||||||    
T  34533664 ggtgatgttttcgatggttgttggtaaaatggacttaaacatggatctggagtttatacatatgctaatggggatgtc 34533587  T

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Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 34916656 - 34916573
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaat 102  Q
    |||| ||||| |||||||| | ||||  ||||||||||||||||||| |||  |||||||| |||||||| ||||| |||||||    
T  34916656 atgaattggggtaatggtgctattttcgatggttgttggtcaaatggactttcacatggatatggagtttatagatctgcaaat 34916573  T

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Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 36951478 - 36951537
Alignment:
Q  37 gatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagattt 96  Q
    ||||||||| |||||||||||| |||||| |||| ||| ||||||||||||| |||||||    
T  36951478 gatgtttttgatggttgttggttaaatggacttagacaaggatctggagtttatagattt 36951537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 349
Target Start/End: Original strand, 38633358 - 38633405
Alignment:
Q  302 ttatcgaaagggaatatatgcaaagagttctgattgtggagaaaatta 349  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  38633358 ttatcgaaagggaatgtatgcaaggagttctaattgtggagaaaatta 38633405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 34916236 - 34916150
Alignment:
Q  25 tgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    |||||||| |||||||||||  |||||| |||||||||||| |  | |||||| | |||||||| ||||||||||||| | ||||||    
T  34916236 tgggctaacggtgatgttttcgatggttattggtcaaatggacagaaacatggctatggagtttatagatttgcaaatggagatgtc 34916150  T

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Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 39848368 - 39848435
Alignment:
Q  35 gtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaat 102  Q
    ||||||||||| |||||||| | |||| ||  ||||||||||||| |||||||| ||||| |||||||    
T  39848368 gtgatgtttttgatggttgtcgatcaattgcgcttatacatggatttggagtttatagatatgcaaat 39848435  T

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Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 39849066 - 39849112
Alignment:
Q  301 gttatcgaaagggaatatatgcaaagagttctgattgtggagaaaat 347  Q
    |||||| ||||||||||||||||| ||||| | ||||||||||||||    
T  39849066 gttatcaaaagggaatatatgcaaggagttttaattgtggagaaaat 39849112  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 36951895 - 36951931
Alignment:
Q  307 gaaagggaatatatgcaaagagttctgattgtggaga 343  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  36951895 gaaagggaatatatgcaaggagttctaattgtggaga 36951931  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 38633242 - 38633296
Alignment:
Q  207 aaaagtgatagagaaagga---ctgatgatatggggccttcaaaatcccgatgga 258  Q
    |||||||| |||||||| |   ||||||||||||| |||||||||||||||||||    
T  38633242 aaaagtgacagagaaagaagaactgatgatatgggcccttcaaaatcccgatgga 38633296  T

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Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 44474634 - 44474909
Alignment:
Q  18 catgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacatt 117  Q
    |||||||||| ||||||||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  44474634 catgagttggactaatggtgatgtttttgaaggttgctggtcaaatggacttatacatggatctggagtttttaaatttgcaaatggggatgtcgacatt 44474733  T
Q  118 ggtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggttgcatatgctcaaatggaaaagtgatag 217  Q
    |||||||||||||||||||  ||| ||| |||||||| |||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||||||||    
T  44474734 ggtaacttcaggagtaaacttctttatgacaacggaacatacacatgttcaaatgaaacaatgtacaagggttgcatatgctcaaatgaaaaagtgatag 44474833  T
Q  218 agaaaggactgatgatatggggccttcaaaatcccgatggagattgtatatgtcctgattcctcatctggtgtgat 293  Q
    |||||||||||||||||||| |||||||||||||  |||||| |||||||| || | ||| |||||||||||||||    
T  44474834 agaaaggactgatgatatggagccttcaaaatcctaatggaggttgtatatatcataattgctcatctggtgtgat 44474909  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 44474364 - 44474431
Alignment:
Q  24 ttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagttttta 91  Q
    |||||||| ||| |||||||||  ||||| |||||||||||||||| ||||||||| |||||||||||    
T  44474364 ttgggctattggcgatgtttttattggttcttggtcaaatggccttgtacatggatttggagttttta 44474431  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 44474502 - 44474589
Alignment:
Q  24 ttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    ||||||||||| ||||  |||| ||||||||  ||||||||| |||| |||||||| |||||||| || ||||| |||| ||||||||    
T  44474502 ttgggctaatgatgatcattttaatggttgtctgtcaaatgggcttagacatggatttggagtttatacatttgtaaatggggatgtc 44474589  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 54 - 257
Target Start/End: Complemental strand, 7045879 - 7045679
Alignment:
Q  54 ttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacattggtaacttcaggagtaaacaacttcatggcaacgga 153  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||||||| | |||||| ||||||||||||| | |||| |||  ||  ||| |||||||    
T  7045879 ttggtcaaatggacttatacatggatatggagtttttacatttgcaaatggagatgtcaacattggtaactttaagagtcaacttctctatgacaacgga 7045780  T
Q  154 aaatacacattttcaaatggaacaatgtacgagggttgcatatgctcaaatggaaaagtgatagagaaaggactgatgatatggggccttcaaaatcccg 253  Q
    || | |||||  |||||||||||||||||||| ||   ||| ||     ||| ||||||||||||||||||||| ||||||||| ||| ||||||||| |    
T  7045779 aagtgcacatggtcaaatggaacaatgtacgaagg--ccat-tgtgttgatgaaaaagtgatagagaaaggactaatgatatggagccctcaaaatcctg 7045683  T
Q  254 atgg 257  Q
    ||||    
T  7045682 atgg 7045679  T

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