View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092_high_4 (Length: 350)
Name: NF10092_high_4
Description: NF10092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092_high_4 |
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| [»] chr3 (10 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 350
Target Start/End: Original strand, 45881705 - 45882041
Alignment:
| Q |
14 |
agataataatggagtcctaagtgcaggacattgtgaaatagcataattcacaacctttttgagtaggcgaggctcaattcaaccacacttgcaacaatct |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45881705 |
agatgataatggagtcctaagtgcaggacattgtgaaatagcataattcacaacctttttgagtaggcgaggctcaattcaaccacacttgcaacaatct |
45881804 |
T |
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| Q |
114 |
agagtgtggagtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaatgtttgaaagtcataagaatagaatgtaa |
213 |
Q |
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| T |
45881805 |
agagtgtggagtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaatgtttgaaagtcataagaatagaatgtaa |
45881904 |
T |
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| Q |
214 |
gatttggaagttgtttctagatatccttgcatcttggggacaaaatgcgagttccaacaacagcatctttgaccttaaaaaatgacagtatgtgtaggat |
313 |
Q |
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| T |
45881905 |
gatttggaagttgtttctagatatccttgcatcttggggacaaaatgcaagttccaacaacggcatctttgaccttaaaaaatgaaagtatgtgaaggat |
45882004 |
T |
|
| Q |
314 |
aatatagtcatgtaagtcacttgagtctatctacgtt |
350 |
Q |
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| T |
45882005 |
aatatagtcatgtaagtcacttgagtctatctacgtt |
45882041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 45 - 350
Target Start/End: Original strand, 45856708 - 45857009
Alignment:
| Q |
45 |
tgtgaaatagcataattcacaacctttttgagtaggcgaggctcaattcaaccacacttgcaacaatctagagtgtggagtgtgatagaggaatcactga |
144 |
Q |
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| T |
45856708 |
tgtgaaatagcataattcacaacctttttgagttggcgaggctcaatgcaaccactcttggaatattctagagcgtggagtgcgatagaggaatcacgaa |
45856807 |
T |
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| Q |
145 |
gagataaaaccttcgacacaaatttggtgaatatcttgaatgtttgaaagtcataagaatagaatgtaagatttggaagttgtttctagatatccttgca |
244 |
Q |
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||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||| ||| | |||||||||||||||||||||||| ||| ||||||| | |
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| T |
45856808 |
gagataaaaccttagacacaaagttggtgaatatcttgaaagttcgaaagtcataggaacacaatgtaagatttggaagttgtttccagagatccttgta |
45856907 |
T |
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| Q |
245 |
tcttggggacaaaatgcgagttccaacaacagcatctttgaccttaaaaaatgacagtatgtgtaggataatatagtcatgtaagtcacttgagtctatc |
344 |
Q |
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| T |
45856908 |
tcttggggacaaaatgcaagttc---caaccgcgtctttagcgttcagaaaagacagtatgtggaggataatatagtcatgtaagtcac-tgagtctatc |
45857003 |
T |
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| Q |
345 |
tacgtt |
350 |
Q |
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| |||| |
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| T |
45857004 |
ttcgtt |
45857009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 2996392 - 2996459
Alignment:
| Q |
129 |
atagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaatgtttgaaagtc |
196 |
Q |
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| T |
2996392 |
atagaggaatcgcaaagagataaaaccttagacacaaatttggtgaatttcttgtaagttcgaaagtc |
2996459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 20948880 - 20948801
Alignment:
| Q |
109 |
aatctagagtgtggagtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaatgtt |
188 |
Q |
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| T |
20948880 |
aatcaagagtgtgtattgcgatagagggatcacgaagagataaaatcttagacacaaacttggtgaatatcttgtatgtt |
20948801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 20949555 - 20949498
Alignment:
| Q |
125 |
tgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttg |
182 |
Q |
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| T |
20949555 |
tgtgatagaggaatcacaaagagataaaattttagacacgaatttggtgaatatcttg |
20949498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 20981806 - 20981867
Alignment:
| Q |
123 |
agtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaa |
184 |
Q |
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| T |
20981806 |
agtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaa |
20981867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 20994965 - 20995026
Alignment:
| Q |
123 |
agtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaa |
184 |
Q |
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|||| |||||||||||||| |||||||||| ||| ||||| ||| |||||||||||||||| |
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| T |
20994965 |
agtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaa |
20995026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 45870386 - 45870467
Alignment:
| Q |
123 |
agtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaatgtttgaaagtcataagaat |
204 |
Q |
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| T |
45870386 |
agtgagatagaggaatcccggagagataaaaccctagaaacaaatctggtgaatatcttataagttcgaaagtcatcagaat |
45870467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 20977539 - 20977482
Alignment:
| Q |
125 |
tgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttg |
182 |
Q |
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|||||| |||||||| | |||||||||| ||| ||||| |||||||||||||||||| |
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| T |
20977539 |
tgtgatggaggaatcgcgaagagataaaatcttagacacgaatttggtgaatatcttg |
20977482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 45850874 - 45850914
Alignment:
| Q |
309 |
aggataatatagtcatgtaagtcacttgagtctatctacgtt |
350 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
45850874 |
aggataatatagtcatgtaagtcac-tgagtctatcttcgtt |
45850914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 44501338 - 44501417
Alignment:
| Q |
114 |
agagtgtggagtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaatgtttgaaa |
193 |
Q |
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|||||||| |||| |||||||||||| |||||||||||||| ||||| ||||| ||||||||||||| || ||||| |
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| T |
44501338 |
agagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgaaagtgtgaaa |
44501417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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