View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092_low_2 (Length: 402)

Name: NF10092_low_2
Description: NF10092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092_low_2
NF10092_low_2
[»] chr2 (2 HSPs)
chr2 (22-391)||(1813256-1813625)
chr2 (248-281)||(6626745-6626778)
[»] chr7 (11 HSPs)
chr7 (248-353)||(38622833-38622938)
chr7 (311-361)||(28976319-28976368)
chr7 (325-364)||(481070-481109)
chr7 (330-373)||(19267790-19267833)
chr7 (310-373)||(27720452-27720515)
chr7 (311-374)||(32736023-32736086)
chr7 (311-373)||(23117282-23117344)
chr7 (311-373)||(28989927-28989989)
chr7 (241-290)||(28976435-28976484)
chr7 (331-367)||(24673353-24673389)
chr7 (311-367)||(32612390-32612446)
[»] chr5 (3 HSPs)
chr5 (311-380)||(29466254-29466323)
chr5 (248-370)||(8928336-8928458)
chr5 (311-355)||(13898736-13898780)
[»] chr6 (5 HSPs)
chr6 (313-373)||(34227377-34227437)
chr6 (311-373)||(30532100-30532162)
chr6 (248-315)||(430983-431050)
chr6 (313-354)||(1346676-1346717)
chr6 (309-353)||(1863308-1863352)
[»] chr4 (2 HSPs)
chr4 (241-344)||(33714190-33714293)
chr4 (248-309)||(26275538-26275599)
[»] chr3 (1 HSPs)
chr3 (311-353)||(7877850-7877892)
[»] chr8 (3 HSPs)
chr8 (248-316)||(1310132-1310200)
chr8 (311-354)||(18899939-18899982)
chr8 (311-373)||(10354745-10354807)
[»] chr1 (4 HSPs)
chr1 (233-358)||(46937557-46937684)
chr1 (311-373)||(52195645-52195707)
chr1 (248-373)||(3950675-3950800)
chr1 (313-366)||(52695461-52695514)


Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 22 - 391
Target Start/End: Original strand, 1813256 - 1813625
Alignment:
22 ctgtggaggtacaaaattcgagtatgtaaaagatactatagtgtgccatgattatcaggagataaaagtccaagagagtacacaggtgctaggtgttggt 121  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1813256 ctgtggaggtacaaaattcgagtatgtaaaagatactacagtgtgccatgattatcaggagataaaagtccaagagagtacacaggtgctaggtgttggt 1813355  T
122 gcgatccctcgttcaattcttgtcatcttgaaggatgaccttgttgatgttgttaaagctggaggtattttcccctcaaactcagtgttgccaaatacta 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1813356 gcgatccctcgttcaattcttgtcatcttgaaggatgaccttgttgatgttgttaaagctggaggtattttcccctcaaactcagtgttgccaaatacta 1813455  T
222 gctagcagtgttattgctcagtggagtttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagcactgt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1813456 gctagcagtgttattgctcagtggagtttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagcactgt 1813555  T
322 tgtgtagtggaatttgaacaaaccattattttccgtgatccgcaatcgacaaagctgatcaaattttcat 391  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
1813556 tgtgtagcggaatttgaacaaaccattattttccgtgatctgcaatcgacaaagctgatcaaattttcat 1813625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 6626778 - 6626745
Alignment:
248 tttgaacaaaccgctattgttccatgatacacta 281  Q
    |||||||||| |||||||||||||||||||||||    
6626778 tttgaacaaatcgctattgttccatgatacacta 6626745  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 353
Target Start/End: Complemental strand, 38622938 - 38622833
Alignment:
248 tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagcactgttgtgtagtggaatttgaacaaaccat 347  Q
    |||||| ||| || |||||||||||||||||||| |||| ||| ||  |||| || |||||| ||||||| |||||| ||| | |||||||||||||  |    
38622938 tttgaataaatcgatattgttccatgatacactatttagcacaaaatgttgtcaaatagcggctatagcattgttgtatagcgaaatttgaacaaactgt 38622839  T
348 tatttt 353  Q
    ||||||    
38622838 tatttt 38622833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 361
Target Start/End: Complemental strand, 28976368 - 28976319
Alignment:
311 tatagcactgttgtgtagtggaatttgaacaaaccattattttccgtgatc 361  Q
    ||||||| |||||||||||||||||||||||||||| || |||||||||||    
28976368 tatagcattgttgtgtagtggaatttgaacaaaccacta-tttccgtgatc 28976319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 364
Target Start/End: Original strand, 481070 - 481109
Alignment:
325 gtagtggaatttgaacaaaccattattttccgtgatccgc 364  Q
    |||||||||||||||||||||  |||||||||||||||||    
481070 gtagtggaatttgaacaaaccgctattttccgtgatccgc 481109  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 373
Target Start/End: Original strand, 19267790 - 19267833
Alignment:
330 ggaatttgaacaaaccattattttccgtgatccgcaatcgacaa 373  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||    
19267790 ggaatttgaacaaaccactattacccgtgatccgcaatcgacaa 19267833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 27720452 - 27720515
Alignment:
310 ttatagcactgttgtgtagtggaatttgaacaaaccattattttccgtgatccgcaatcgacaa 373  Q
    ||||||||||||   ||||  |||||||||||||||| |||||||| ||||||||||| |||||    
27720452 ttatagcactgtaaagtagcagaatttgaacaaaccactattttccatgatccgcaattgacaa 27720515  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 374
Target Start/End: Complemental strand, 32736086 - 32736023
Alignment:
311 tatagcactgttgtgtagtggaatttgaacaaaccattattttccgtgatccgcaatcgacaaa 374  Q
    ||||||| ||||| |||| ||||||||||||||||  ||||| |||||||| ||||| ||||||    
32736086 tatagcagtgttgcgtagcggaatttgaacaaaccgctatttcccgtgatctgcaattgacaaa 32736023  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 23117344 - 23117282
Alignment:
311 tatagcactgttgtgtagtggaatttgaacaaaccattattttccgtgatccgcaatcgacaa 373  Q
    |||||||||||   |||| ||||||||||||||||| |||||||||  ||||||||| |||||    
23117344 tatagcactgtcacgtagcggaatttgaacaaaccactattttccgcaatccgcaattgacaa 23117282  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 28989989 - 28989927
Alignment:
311 tatagcactgttgtgtagtggaatttgaacaaaccattattttccgtgatccgcaatcgacaa 373  Q
    ||||||| ||||| |||| |||||||||||||| || |||||||| ||||| ||||| |||||    
28989989 tatagcagtgttgcgtagcggaatttgaacaaatcactattttccatgatctgcaattgacaa 28989927  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 28976484 - 28976435
Alignment:
241 agtggagtttgaacaaaccgctattgttccatgatacactacttagtaca 290  Q
    |||||| ||| ||||||| |||||| ||||||||||||||| ||||||||    
28976484 agtggaatttaaacaaactgctatttttccatgatacactatttagtaca 28976435  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 367
Target Start/End: Complemental strand, 24673389 - 24673353
Alignment:
331 gaatttgaacaaaccattattttccgtgatccgcaat 367  Q
    |||||||||||||||| ||||||| ||||||||||||    
24673389 gaatttgaacaaaccactattttctgtgatccgcaat 24673353  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 32612446 - 32612390
Alignment:
311 tatagcactgttgtgtagtggaatttgaacaaaccattattttccgtgatccgcaat 367  Q
    |||||||||||||||||| |||||||||  |||||  ||||||| | ||||||||||    
32612446 tatagcactgttgtgtagcggaatttgactaaaccgctattttctgcgatccgcaat 32612390  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 380
Target Start/End: Original strand, 29466254 - 29466323
Alignment:
311 tatagcactgttgtgtagtggaatttgaacaaaccattattttccgtgatccgcaatcgacaaagctgat 380  Q
    ||||||||| || ||||| ||||||||||||||||||||||||||  ||||||| || ||||| ||||||    
29466254 tatagcacttttatgtagcggaatttgaacaaaccattattttccaggatccgcgattgacaacgctgat 29466323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 370
Target Start/End: Complemental strand, 8928458 - 8928336
Alignment:
248 tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagcactgttgtgtagtggaatttgaacaaaccat 347  Q
    |||||||||| ||||||||||| ||||||| ||| |||||||| || ||| |||| || | | || | ||||||||||||| | |||   |||| ||||     
8928458 tttgaacaaatcgctattgttcgatgatacgctatttagtacaaaatattctgaaataactgctacaacactgttgtgtagcgcaatacaaacagaccac 8928359  T
348 tattttccgtgatccgcaatcga 370  Q
    ||||| | ||||||| |||||||    
8928358 tatttcctgtgatccacaatcga 8928336  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 13898736 - 13898780
Alignment:
311 tatagcactgttgtgtagtggaatttgaacaaaccattattttcc 355  Q
    |||||||||||||||||| ||||||| ||||| ||| ||||||||    
13898736 tatagcactgttgtgtagcggaattttaacaacccactattttcc 13898780  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 34227377 - 34227437
Alignment:
313 tagcactgttgtgtagtggaatttgaacaaaccattattttccgtgatccgcaatcgacaa 373  Q
    |||||||||||||||||| |||||||||||||  ||||||||| ||||| ||||| |||||    
34227377 tagcactgttgtgtagtgaaatttgaacaaactgttattttccatgatcggcaattgacaa 34227437  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 30532162 - 30532100
Alignment:
311 tatagcactgttgtgtagtggaatttgaacaaaccattattttccgtgatccgcaatcgacaa 373  Q
    ||||| ||||| |||||| |||||| |||||||||| ||||||| |||||||||||| |||||    
30532162 tatagtactgtagtgtagaggaattcgaacaaaccactattttctgtgatccgcaattgacaa 30532100  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 315
Target Start/End: Original strand, 430983 - 431050
Alignment:
248 tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatag 315  Q
    |||||||||| | |||||||||||| ||| ||||||||||||| || ||||| || |||||| |||||    
430983 tttgaacaaatcactattgttccattataaactacttagtacaaaatattgttaaatagcggctatag 431050  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 1346717 - 1346676
Alignment:
313 tagcactgttgtgtagtggaatttgaacaaaccattattttc 354  Q
    |||||||||||||||| |||||||| |||||||| |||||||    
1346717 tagcactgttgtgtagaggaatttgtacaaaccactattttc 1346676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 1863352 - 1863308
Alignment:
309 gttatagcactgttgtgtagtggaatttgaacaaaccattatttt 353  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    
1863352 gttatagcagtgttgagtagtggaatttgaccaaaccactatttt 1863308  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 344
Target Start/End: Complemental strand, 33714293 - 33714190
Alignment:
241 agtggagtttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagcactgttgtgtagtggaatttgaac 340  Q
    |||||| |||||||||| |||| |||||||| ||||  | | |||||||| || |||||||| |||  |||||| ||||| || |||| |||||||||||    
33714293 agtggaatttgaacaaatcgctgttgttccacgataagccatttagtacaaaatattgtgaaatagacgttataacactgatgcgtagcggaatttgaac 33714194  T
341 aaac 344  Q
    ||||    
33714193 aaac 33714190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 309
Target Start/End: Complemental strand, 26275599 - 26275538
Alignment:
248 tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcgg 309  Q
    |||||||||| |||||||||||||  |||| ||| |||||||| || |||||||| ||||||    
26275599 tttgaacaaatcgctattgttccaaaatacgctatttagtacaaaatattgtgaaatagcgg 26275538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 7877850 - 7877892
Alignment:
311 tatagcactgttgtgtagtggaatttgaacaaaccattatttt 353  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
7877850 tatagcactgtagtgtagtggaatttgaacaaaccataatttt 7877892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 1310132 - 1310200
Alignment:
248 tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagc 316  Q
    ||||||||||  ||||||||||| |||||||||| ||||||||  | |||||||| |||||| ||||||    
1310132 tttgaacaaattgctattgttccttgatacactatttagtacaatatattgtgaaatagcggctatagc 1310200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 354
Target Start/End: Complemental strand, 18899982 - 18899939
Alignment:
311 tatagcactgttgtgtagtggaatttgaacaaaccattattttc 354  Q
    |||||||||||||||||| ||||||||||||||| | |||||||    
18899982 tatagcactgttgtgtagcggaatttgaacaaactactattttc 18899939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 10354807 - 10354745
Alignment:
311 tatagcactgttgtgtagtggaatttgaacaaaccattattttccgtgatccgcaatcgacaa 373  Q
    ||||||||| ||| ||||||||||||||||||||   ||||||||| ||||||| || |||||    
10354807 tatagcactattgcgtagtggaatttgaacaaacatctattttccgcgatccgccattgacaa 10354745  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 358
Target Start/End: Original strand, 46937557 - 46937684
Alignment:
233 tattgctcagtggagtttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggt--tatagcactgttgtgtagtg 330  Q
    ||||||| || ||| ||||||||||  |||||||||||  ||| | ||| |||||||| || |||||||| ||| ||   |||| ||||||||  ||| |    
46937557 tattgcttagcggaatttgaacaaagtgctattgttccgcgatgcgctatttagtacaaaatattgtgaaatagtggcgctataacactgttgcatagcg 46937656  T
331 gaatttgaacaaaccattattttccgtg 358  Q
    |||||||||||||||  |||||||||||    
46937657 gaatttgaacaaaccgctattttccgtg 46937684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 373
Target Start/End: Original strand, 52195645 - 52195707
Alignment:
311 tatagcactgttgtgtagtggaatttgaacaaaccattattttccgtgatccgcaatcgacaa 373  Q
    ||||||||||| ||||||| |||||| |||||||| ||||||||||  || |||||| |||||    
52195645 tatagcactgtcgtgtagtagaattttaacaaaccgttattttccgctattcgcaattgacaa 52195707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 373
Target Start/End: Original strand, 3950675 - 3950800
Alignment:
248 tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagcactgttgtgtagtggaatttgaacaaaccat 347  Q
    |||||||||| | ||||||||||  ||||| ||| |||||||  || | |||||| |||| | ||||| || ||||  ||  ||||||||| ||||||      
3950675 tttgaacaaatcactattgttccgcgatacgctatttagtaccaaataatgtgaaatagctgctatagtaccgttgcataacggaatttgagcaaaccgc 3950774  T
348 tattttccgtgatccgcaatcgacaa 373  Q
    ||||||  ||||||||||||||||||    
3950775 tattttttgtgatccgcaatcgacaa 3950800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 52695461 - 52695514
Alignment:
313 tagcactgttgtgtagtggaatttgaacaaaccattattttccgtgatccgcaa 366  Q
    ||||||||||||| |||| ||||||||||||| | ||||| |||||||| ||||    
52695461 tagcactgttgtgcagtgtaatttgaacaaacaactatttcccgtgatctgcaa 52695514  T

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