View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092_low_7 (Length: 328)

Name: NF10092_low_7
Description: NF10092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092_low_7
NF10092_low_7
[»] chr7 (6 HSPs)
chr7 (48-314)||(22972773-22973039)
chr7 (48-169)||(22964529-22964650)
chr7 (1-42)||(22970469-22970510)
chr7 (210-279)||(32136853-32136924)
chr7 (129-240)||(23756591-23756703)
chr7 (104-140)||(26493898-26493934)
[»] chr8 (11 HSPs)
chr8 (48-314)||(12585618-12585884)
chr8 (48-284)||(26571608-26571849)
chr8 (166-257)||(2537183-2537274)
chr8 (122-256)||(42164003-42164137)
chr8 (1-42)||(12587117-12587158)
chr8 (1-42)||(35036235-35036276)
chr8 (76-247)||(36974212-36974380)
chr8 (122-277)||(40381604-40381759)
chr8 (208-267)||(26647930-26647989)
chr8 (122-197)||(14539500-14539575)
chr8 (168-240)||(37728440-37728512)
[»] chr6 (3 HSPs)
chr6 (48-314)||(6901462-6901734)
chr6 (122-277)||(6822537-6822692)
chr6 (1-42)||(6901184-6901225)
[»] chr3 (11 HSPs)
chr3 (48-314)||(49600653-49600921)
chr3 (156-261)||(44111228-44111332)
chr3 (122-277)||(1902120-1902275)
chr3 (122-277)||(1911566-1911721)
chr3 (1-42)||(49602667-49602708)
chr3 (145-277)||(52259697-52259829)
chr3 (208-277)||(54393337-54393406)
chr3 (170-248)||(34962266-34962345)
chr3 (156-247)||(10321267-10321360)
chr3 (170-256)||(7729824-7729909)
chr3 (104-140)||(53710353-53710389)
[»] chr2 (10 HSPs)
chr2 (48-256)||(22318521-22318720)
chr2 (1-42)||(22329623-22329664)
chr2 (163-247)||(31781011-31781093)
chr2 (184-239)||(42071433-42071488)
chr2 (117-179)||(4075566-4075628)
chr2 (166-267)||(21490270-21490369)
chr2 (133-257)||(7813519-7813641)
chr2 (104-140)||(22464625-22464661)
chr2 (104-140)||(22483504-22483540)
chr2 (104-140)||(34526307-34526343)
[»] chr4 (12 HSPs)
chr4 (144-279)||(6495718-6495853)
chr4 (145-257)||(27907245-27907355)
chr4 (140-245)||(46732648-46732752)
chr4 (181-231)||(50977860-50977910)
chr4 (48-124)||(4923058-4923138)
chr4 (145-257)||(40286525-40286643)
chr4 (155-197)||(1112105-1112147)
chr4 (208-258)||(47552075-47552125)
chr4 (201-258)||(15844261-15844318)
chr4 (207-239)||(24368060-24368092)
chr4 (104-140)||(27364838-27364874)
chr4 (104-140)||(55464844-55464880)
[»] chr5 (9 HSPs)
chr5 (165-279)||(18108244-18108357)
chr5 (187-284)||(14811421-14811517)
chr5 (208-267)||(10710987-10711046)
chr5 (171-247)||(17832169-17832245)
chr5 (122-277)||(15726879-15727034)
chr5 (201-240)||(27343172-27343211)
chr5 (208-277)||(3294213-3294281)
chr5 (1-30)||(3497298-3497327)
chr5 (104-140)||(26540839-26540875)
[»] chr1 (4 HSPs)
chr1 (122-277)||(30294105-30294260)
chr1 (1-42)||(21880115-21880156)
chr1 (208-240)||(29095870-29095902)
chr1 (104-140)||(21973972-21974008)
[»] scaffold0168 (1 HSPs)
scaffold0168 (104-140)||(15769-15805)
[»] scaffold0019 (1 HSPs)
scaffold0019 (104-140)||(135038-135074)
[»] scaffold0012 (1 HSPs)
scaffold0012 (104-140)||(197060-197096)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 48 - 314
Target Start/End: Original strand, 22972773 - 22973039
Alignment:
Q  48 ttggtatatttgcttttaaagttatctttgatactacctgtggcaactgcaacagctgaaagagctttctcagctatgaagattatcaagactcagttgc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22972773 ttggtatatttgcttttaaagttatctttgatactacctgtggcaactgcaacagctgaaagagctttctcagctatgaagattatcaagactcagttgc 22972872  T
Q  148 gaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattcgatattt 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22972873 gaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatagagagagatttttattgagattgaaaatgagaaaatcattcgatattt 22972972  T
Q  248 ccaaaatatgacaagtcgtagaggacaattgtaattgttgttggcagctgggttttggtgtggtgat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22972973 ccaaaatatgacaagtcgtagaggacaattgtaattgttgttggcagctgggttttggtttggtgat 22973039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 22964529 - 22964650
Alignment:
Q  48 ttggtatatttgcttttaaagttatctttgatactacctgtggcaactgcaacagctgaaagagctttctcagctatgaagattatcaagactcagttgc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22964529 ttggtatatttgcttttaaagttatctttgatactacctgtggcaactgcaacagctgaaagagctttctcagctatgaagattatcaagactcagttgc 22964628  T
Q  148 gaaatcgaatgggtgatcaatg 169  Q
    ||||| ||||||||||||||||    
T  22964629 gaaatggaatgggtgatcaatg 22964650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22970469 - 22970510
Alignment:
Q  1 ttatgattgatttcctatgatttttatgtactcatgagtagt 42  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  22970469 ttatgatagatttcctatgatttttatgtactcatgagtagt 22970510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 32136924 - 32136853
Alignment:
Q  210 tttattgagatt--gaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgtagaggacaattgt 279  Q
    ||||||||||||  ||||||||||||| ||||||||| || ||||| |||| || |||||||| ||||||||    
T  32136924 tttattgagattttgaaaatgagaaaaacattcgataatttcaaaaaatgataaatcgtagagaacaattgt 32136853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 240
Target Start/End: Original strand, 23756591 - 23756703
Alignment:
Q  129 attatcaagactcagttgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagatt-gaaaat 227  Q
    |||||||||| |||| ||||||||  | |||| ||| | ||||||| |||| || |||||  ||||||| | | | | ||||||||||| ||| ||||||    
T  23756591 attatcaagaatcagatgcgaaatttagtgggagattactggttaagtgatcgtttagttgtttatatagaaaaatatatttttattgatatttgaaaat 23756690  T
Q  228 gagaaaatcattc 240  Q
    |||||||||||||    
T  23756691 gagaaaatcattc 23756703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 26493934 - 26493898
Alignment:
Q  104 tgaaagagctttctcagctatgaagattatcaagact 140  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  26493934 tgaaagagctttttcagcaatgaagattatcaagact 26493898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 48 - 314
Target Start/End: Complemental strand, 12585884 - 12585618
Alignment:
Q  48 ttggtatatttgcttttaaagttatctttgatactacctgtggcaactgcaacagctgaaagagctttctcagctatgaagattatcaagactcagttgc 147  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12585884 ttggtatatttgcttttatagttatctttgatactacctgtggcaactgcaacagctgaaagagctttctcagctatgaagattatcaagactcagttgc 12585785  T
Q  148 gaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattcgatattt 247  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  12585784 gaaattgaatgggtgatcaatggttaaatgattgtctagttacttatatagagagagagatttttattgagattgaaaatgagaaaatcattcgatattt 12585685  T
Q  248 ccaaaatatgacaagtcgtagaggacaattgtaattgttgttggcagctgggttttggtgtggtgat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12585684 ccaaaatatgacaagtcgtagaggacaattgtaattgttgttggcagctgggttttggtttggtgat 12585618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 48 - 284
Target Start/End: Complemental strand, 26571849 - 26571608
Alignment:
Q  48 ttggtatatttgcttttaaagttatctttgatactacctgtggcaa-ctgcaacagctgaaagagctttctcagctatgaagattatcaagactcagttg 146  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  26571849 ttggtatatttgcttttaaagttatctttgatactacatgtggcaaactacaacagttgaaagagctttctcggctatgaagattatcaagactgagttg 26571750  T
Q  147 cgaaatcgaatgggtgatcaatggtt-aaatgattgtctagttacttatatatatagagaga--tttttattgagattgaaaatgagaaaatcattcgat 243  Q
    | |||||| || | |||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  26571749 caaaatcggatagatgatcaatggtttaaatgattgtctagttacttatatatatagagagaggtttttattgagattgaaaatgagaaaatcattcgat 26571650  T
Q  244 a-tttccaaaatatgacaagtcgtagaggacaattgtaattg 284  Q
    | |||| |||| ||||||||||||| ||||||||||||||||    
T  26571649 attttcaaaaaaatgacaagtcgtataggacaattgtaattg 26571608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 2537274 - 2537183
Alignment:
Q  166 aatggttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattcgatatttccaaaatatg 257  Q
    ||||||||||| ||||| |||||||||||||| | ||||| |||||| |||  |||||||||||||||||||||| || | || ||||||||    
T  2537274 aatggttaaattattgtttagttacttatatagagagagatatttttgttggtattgaaaatgagaaaatcattcaatgtatctaaaatatg 2537183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 256
Target Start/End: Original strand, 42164003 - 42164137
Alignment:
Q  122 tatgaagattatcaagactcagttgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagatt 221  Q
    |||||| |||||||||| |||  |  ||||||||||| | ||| |  |||||||||||||| |||||| ||||||| | |  || ||||||||||| |||    
T  42164003 tatgaatattatcaagaatcaaataggaaatcgaatgagagataatcggttaaatgattgtttagttatttatatagagaaggatatttttattgatatt 42164102  T
Q  222 gaaaatgagaaaatcattcgatatttccaaaatat 256  Q
     |||||||||||||||||| | ||||||| |||||    
T  42164103 aaaaatgagaaaatcattcaaaatttccataatat 42164137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12587158 - 12587117
Alignment:
Q  1 ttatgattgatttcctatgatttttatgtactcatgagtagt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12587158 ttatgattgatttcctatgatttttatgtactcatgagtagt 12587117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35036235 - 35036276
Alignment:
Q  1 ttatgattgatttcctatgatttttatgtactcatgagtagt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  35036235 ttatgattgatttcctatgatttttatgtactcatgagtagt 35036276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 247
Target Start/End: Complemental strand, 36974380 - 36974212
Alignment:
Q  76 tgatactacctgtggcaactgcaacagctgaaagagctttctcagctatgaagattatcaagactcagttgcgaaatcgaatgggtgatcaatggttaaa 175  Q
    ||||||||| |||||||||||||||| ||||||||| |||||| ||| |  |  || |||||| | ||||||||||||  ||  | ||||| |   ||||    
T  36974380 tgatactacatgtggcaactgcaacaactgaaagagttttctctgctttataagttttcaagaatgagttgcgaaatcacataagagatcatt---taaa 36974284  T
Q  176 tgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattcgatattt 247  Q
    ||||||  |||||| ||||||||| |||||  |||||| |||||| ||||||||| ||| ||||| ||||||    
T  36974283 tgattgcttagttaattatatataaagagatgtttttagtgagatagaaaatgagtaaaacattcaatattt 36974212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 277
Target Start/End: Complemental strand, 40381759 - 40381604
Alignment:
Q  122 tatgaagattatcaagactcagttgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagatt 221  Q
    |||||| |||||||||| ||   || ||||||||||| | ||| |  |||||||||||||| |||||| ||||||| | | | | ||||||||||| |||    
T  40381759 tatgaatattatcaagaatcgcatgtgaaatcgaatgagagatgatcggttaaatgattgtttagttatttatatagagaaatatatttttattgatatt 40381660  T
Q  222 gaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgtagaggacaatt 277  Q
    ||||||||||||||| ||| |  |||| | ||||| | || ||||||| |||||||    
T  40381659 gaaaatgagaaaatctttcaaagtttctataatataaaaaatcgtagaagacaatt 40381604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 26647930 - 26647989
Alignment:
Q  208 tttttattgagattgaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgta 267  Q
    |||||||||||||||||||||||||||| |||| ||||||  |||||||| ||| |||||    
T  26647930 tttttattgagattgaaaatgagaaaattattcaatatttttaaaatatggcaaatcgta 26647989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 14539500 - 14539575
Alignment:
Q  122 tatgaagattatcaagactcagttgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatata 197  Q
    |||||| |||||||| | |||| ||||||||||| |||| ||| |  |||||||||||||| |||||| |||||||    
T  14539500 tatgaatattatcaaaaatcagatgcgaaatcgagtgggagatgaccggttaaatgattgtttagttatttatata 14539575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 37728440 - 37728512
Alignment:
Q  168 tggttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattc 240  Q
    |||||||||||| || |||||| ||||||| | |  || ||||||||||| ||||||||| ||||||| ||||    
T  37728440 tggttaaatgatcgtttagttatttatatagagaatgatatttttattgatattgaaaattagaaaattattc 37728512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 48 - 314
Target Start/End: Original strand, 6901462 - 6901734
Alignment:
Q  48 ttggtatatttgcttttaaagttatctttgatactacctgtggcaactgcaacagctgaaagagctttctcagctatgaagattatcaagactcagttgc 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6901462 ttggtatatttgcttttaaagttatctttgatactacctgtggcaactacaacagctgaaagagctttctcagctatgaagattatcaagactcagctgc 6901561  T
Q  148 gaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatat------atagagagatttttattgagattgaaaatgagaaaatcattcg 241  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||      | |||||||||||||||||||||||||||||||||||||||||    
T  6901562 gaaatcgaatggatgatcaatggttaaatgattgtctagttacttatatatagagagagagagagatttttattgagattgaaaatgagaaaatcattcg 6901661  T
Q  242 atatttccaaaatatgacaagtcgtagaggacaattgtaattgttgttggcagctgggttttggtgtggtgat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6901662 atatttccaaaatatgacaagtcgtagaggacaattgtaattgttgttggcagctgggttttggtttggtgat 6901734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 277
Target Start/End: Complemental strand, 6822692 - 6822537
Alignment:
Q  122 tatgaagattatcaagactcagttgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagatt 221  Q
    |||||| |||||||||| || | || ||||||||||| | ||| |  |||||||| ||||| |||||| ||||||| | | ||| ||||||||||| |||    
T  6822692 tatgaatattatcaagaatcggatgtgaaatcgaatgagagatgatcggttaaataattgtttagttatttatataaagaaagaaatttttattgatatt 6822593  T
Q  222 gaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgtagaggacaatt 277  Q
    ||||||||  ||||||||| |  |||||| ||||||| || | ||| |||||||||    
T  6822592 gaaaatgaacaaatcattcaaagtttccataatatgaaaaattgtaaaggacaatt 6822537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6901184 - 6901225
Alignment:
Q  1 ttatgattgatttcctatgatttttatgtactcatgagtagt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6901184 ttatgattgatttcctatgatttttatgtactcatgagtagt 6901225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 48 - 314
Target Start/End: Complemental strand, 49600921 - 49600653
Alignment:
Q  48 ttggtatatttgcttttaaagttatctttgatactacctgtggcaactgcaacagctgaaagagctttctcagctatgaagattatcaagactcagttgc 147  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49600921 ttggtatatttgcttttaaagttatctttgatactacttgtggcaactgcaacagctgaaagagctttttcagctatgaagattatcaagactcagttgc 49600822  T
Q  148 gaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattcgatattt 247  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  49600821 gaaatcgaatgggtgattaatggttagatgattgtctagttacttatatagaaagagagatttttattgagattgaaaatgagaaaatcattcgatattt 49600722  T
Q  248 ccaaaatatgacaagtcg--tagaggacaattgtaattgttgttggcagctgggttttggtgtggtgat 314  Q
    |||||||||||  |||||  ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  49600721 ccaaaatatgaatagtcgcatagaggacaattgtaattgttgttggcagctgggttttggtttggtgat 49600653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 44111332 - 44111228
Alignment:
Q  156 atgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattcgatatttccaaaata 255  Q
    ||||| ||||||||||||| || |||| |||||||||||||| | || || |||||||||||||| |||||||| ||||| |||| ||||||| |||| |    
T  44111332 atgggagatcaatggttaattg-ttgtttagttacttatatagagagtgatatttttattgagatcgaaaatgaaaaaattattcaatatttctaaaaaa 44111234  T
Q  256 tgacaa 261  Q
    ||||||    
T  44111233 tgacaa 44111228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 277
Target Start/End: Original strand, 1902120 - 1902275
Alignment:
Q  122 tatgaagattatcaagactcagttgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagatt 221  Q
    |||||| |||||||||| || | ||||||||| ||||   ||| | ||||||||| ||||| |||||| ||||||| | | ||| ||||| ||||| |||    
T  1902120 tatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatatt 1902219  T
Q  222 gaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgtagaggacaatt 277  Q
    ||||||||||||||||||| |  |||||| |||| || || || || |||||||||    
T  1902220 gaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaatt 1902275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 277
Target Start/End: Original strand, 1911566 - 1911721
Alignment:
Q  122 tatgaagattatcaagactcagttgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagatt 221  Q
    |||||| |||||||||| || | ||||||||| ||||   ||| | ||||||||| ||||| |||||| ||||||| | | ||| ||||| ||||| |||    
T  1911566 tatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatatt 1911665  T
Q  222 gaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgtagaggacaatt 277  Q
    ||||||||||||||||||| |  |||||| |||| || || || || |||||||||    
T  1911666 gaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaatt 1911721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 49602708 - 49602667
Alignment:
Q  1 ttatgattgatttcctatgatttttatgtactcatgagtagt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  49602708 ttatgattgatttcctatgatttttatgtactcatgagtagt 49602667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 277
Target Start/End: Original strand, 52259697 - 52259829
Alignment:
Q  145 tgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattcgata 244  Q
    |||||||||||||||| ||| | ||||||||||||||| | |||  ||||||  |  |||  ||||||||||| ||||| |||||||||||||||| ||     
T  52259697 tgcgaaatcgaatgggagatgactggttaaatgattgtttggttgtttatatggagggaggtatttttattgatattgagaatgagaaaatcattcaatg 52259796  T
Q  245 tttccaaaatatgacaagtcgtagaggacaatt 277  Q
    |||| | ||||| | |  |||||||||||||||    
T  52259797 tttctagaatataaaacatcgtagaggacaatt 52259829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 54393337 - 54393406
Alignment:
Q  208 tttttattgagattgaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgtagaggacaatt 277  Q
    |||||||||| |||||||||||||||||||||| |  |||||| |||||||  | |||||||||||||||    
T  54393337 tttttattgatattgaaaatgagaaaatcattcaaagtttccataatatgaataatcgtagaggacaatt 54393406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 34962345 - 34962266
Alignment:
Q  170 gttaaatgattgtctagttacttatatatatagagaga-tttttattgagattgaaaatgagaaaatcattcgatatttc 248  Q
    ||||||||||||| |||||| ||||||| |  |||| | |||||||||| |||||||| ||||||||||||| |||||||    
T  34962345 gttaaatgattgtttagttatttatatagaatgagatactttttattgatattgaaaacgagaaaatcattcaatatttc 34962266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 10321267 - 10321360
Alignment:
Q  156 atgggtgatcaatggttaaatgattgtctagttacttatatatatagag-aga-tttttattgagattgaaaatgagaaaatcattcgatattt 247  Q
    ||||| |||||||| |||||||||| | |||||||  ||||| | |||| ||  |||||||||||||||||||| ||||||||||| |||||||    
T  10321267 atgggagatcaatgattaaatgattatttagttacaaatatagagagaggagtgtttttattgagattgaaaatcagaaaatcatttgatattt 10321360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 7729824 - 7729909
Alignment:
Q  170 gttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattcgatatttccaaaatat 256  Q
    ||||||||||||| || ||| ||||||| | | | | ||||||||||| |||||||||||| ||||||||| | ||||||| |||||    
T  7729824 gttaaatgattgtttaattatttatatagagaaatatatttttattgatattgaaaatgag-aaatcattcaaaatttccataatat 7729909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 53710353 - 53710389
Alignment:
Q  104 tgaaagagctttctcagctatgaagattatcaagact 140  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  53710353 tgaaagagctttttcagcaatgaagattatcaagact 53710389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 48 - 256
Target Start/End: Complemental strand, 22318720 - 22318521
Alignment:
Q  48 ttggtatatttgcttttaaagttatctttgatactacctgtggcaactgcaacagctgaaagagctttctcagctatgaagattatcaagactcagttgc 147  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||      ||||||||||||||||||| |||| |||||||| | | || ||||||    
T  22318720 ttggtatatttgcttttaaagttatctttgatactacatgtggcaac------agctgaaagagctttctcatctataaagattattatgtctgagttgc 22318627  T
Q  148 gaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattcgatattt 247  Q
     |||| ||||||||||| ||||||||||||||||   ||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||    
T  22318626 aaaattgaatgggtgatgaatggttaaatgattg---agttacttatatatagagagaggtttttattgagattgaaaatgtgaaaatcattcgatattt 22318530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22329664 - 22329623
Alignment:
Q  1 ttatgattgatttcctatgatttttatgtactcatgagtagt 42  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  22329664 ttatgattgattccctattatttttatgtactcatgagtagt 22329623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 31781011 - 31781093
Alignment:
Q  163 atcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattcgatattt 247  Q
    |||||| ||||||||||||| |||||||||||| | | ||||| | ||||||| | ||||||||| ||||||| |||||||||||    
T  31781011 atcaatagttaaatgattgt-tagttacttatacagagagaga-agttttattaaaattgaaaataagaaaataattcgatattt 31781093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 42071488 - 42071433
Alignment:
Q  184 tagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcatt 239  Q
    |||||| ||||||| ||| | | ||||||||||| |||||||||||||||||||||    
T  42071488 tagttatttatatagataaatatatttttattgatattgaaaatgagaaaatcatt 42071433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 4075628 - 4075566
Alignment:
Q  117 tcagctatgaagattatcaagactcagttgcgaaatcgaatgggtgatcaatggttaaatgat 179  Q
    ||||||||||||||| | |||| ||| || || |||  |||||||||||||||||||||||||    
T  4075628 tcagctatgaagattgtgaagagtcatttacgtaataaaatgggtgatcaatggttaaatgat 4075566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 267
Target Start/End: Original strand, 21490270 - 21490369
Alignment:
Q  166 aatggttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattcgatatttccaaaatatgacaagtcg 265  Q
    ||||||||||||||||||  |||||||| ||| | |   | ||||||||||| ||||||| |||||||||||||| || |||| | ||||||| || |||    
T  21490270 aatggttaaatgattgtc--gttacttagatagagatgtatatttttattgatattgaaattgagaaaatcattcaatgtttcaagaatatgaaaaatcg 21490367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 7813519 - 7813641
Alignment:
Q  133 tcaagactcagttgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaa 232  Q
    |||||| |||| || |||||||  ||||  || ||||||||||  ||||| |||||||||||||| |  |||| || ||| |||  ||| ||||||||||    
T  7813519 tcaagaatcagatgtgaaatcgtttgggaaatgaatggttaaacaattgtttagttacttatataga--gagatatatttgttggtatttaaaatgagaa 7813616  T
Q  233 aatcattcgatatttccaaaatatg 257  Q
    |||||||| ||||||| | ||||||    
T  7813617 aatcattcaatatttctagaatatg 7813641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 22464625 - 22464661
Alignment:
Q  104 tgaaagagctttctcagctatgaagattatcaagact 140  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  22464625 tgaaagagctttttcagcaatgaagattatcaagact 22464661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 22483504 - 22483540
Alignment:
Q  104 tgaaagagctttctcagctatgaagattatcaagact 140  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  22483504 tgaaagagctttttcagcaatgaagattatcaagact 22483540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 34526307 - 34526343
Alignment:
Q  104 tgaaagagctttctcagctatgaagattatcaagact 140  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  34526307 tgaaagagctttttcagcaatgaagattatcaagact 34526343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 6495718 - 6495853
Alignment:
Q  144 ttgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagag--atttttattgagattgaaaatgagaaaatcattcg 241  Q
    ||||||||||| ||| || |||||||  ||||||||||| |||||||||||||||| ||||||  ||||||||||||| | ||||||||||||||||       
T  6495718 ttgcgaaatcgcatgagtaatcaatgactaaatgattgtttagttacttatatatagagagagatatttttattgagactaaaaatgagaaaatcat--a 6495815  T
Q  242 atatttccaaaatatgacaagtcgtagaggacaattgt 279  Q
    |||||| ||||||||||||| ||||| || ||||||||    
T  6495816 atattttcaaaatatgacaaatcgtatagaacaattgt 6495853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 27907355 - 27907245
Alignment:
Q  145 tgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattcgata 244  Q
    |||||||||| || || ||| ||||||||||  ||||| |||||||||||||| |  |||| |||||| |||  ||||||||||| |||||||||| |||    
T  27907355 tgcgaaatcgcataggagatgaatggttaaacaattgtttagttacttatataga--gagatatttttgttggtattgaaaatgaaaaaatcattcaata 27907258  T
Q  245 tttccaaaatatg 257  Q
    ||| |||||||||    
T  27907257 ttttcaaaatatg 27907245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 245
Target Start/End: Complemental strand, 46732752 - 46732648
Alignment:
Q  140 tcagttgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcatt 239  Q
    |||| ||||||||| |||||| ||| | ||||||| ||||||| || ||| ||||||| | ||||| ||||| ||||| |||||||||||||||| ||||    
T  46732752 tcagatgcgaaatcaaatgggagatgactggttaattgattgtttaattatttatatagaaagagatatttt-attgatattgaaaatgagaaaaacatt 46732654  T
Q  240 cgatat 245  Q
    | ||||    
T  46732653 caatat 46732648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 50977910 - 50977860
Alignment:
Q  181 gtctagttacttatatatatagagagatttttattgagattgaaaatgaga 231  Q
    ||||| ||||||||||||| |||||  ||||||||||||||||||||||||    
T  50977910 gtctaattacttatatatagagagatgtttttattgagattgaaaatgaga 50977860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 4923058 - 4923138
Alignment:
Q  48 ttggtatatttgcttttaaagttatctttgatactacctgtggcaac----tgcaacagctgaaagagctttctcagctat 124  Q
    ||||||||||| |||||| ||||||| |||||||||| |||| ||||    ||||||| ||||||||| |||||| |||||    
T  4923058 ttggtatatttacttttagagttatcattgatactacatgtgacaactgcatgcaacaactgaaagagatttctctgctat 4923138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 40286525 - 40286643
Alignment:
Q  145 tgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagag------agatttttattgagattgaaaatgagaaaatcat 238  Q
    |||||||||| || || |||  |||||||||  ||||| ||||| |||||||||||||||      |||||||| |||  ||||||||||| ||||||||    
T  40286525 tgcgaaatcgcattggagatggatggttaaacaattgtttagttgcttatatatatagagagagagagatttttgttggtattgaaaatgaaaaaatcat 40286624  T
Q  239 tcgatatttccaaaatatg 257  Q
    || |||||| || ||||||    
T  40286625 tcaatattttcagaatatg 40286643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 1112147 - 1112105
Alignment:
Q  155 aatgggtgatcaatggttaaatgattgtctagttacttatata 197  Q
    ||||| |||||||||||||||||||||||| || |||||||||    
T  1112147 aatggatgatcaatggttaaatgattgtcttgtaacttatata 1112105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 47552075 - 47552125
Alignment:
Q  208 tttttattgagattgaaaatgagaaaatcattcgatatttccaaaatatga 258  Q
    |||||||||| |||||||||||||||||||||| |  |||||| |||||||    
T  47552075 tttttattgatattgaaaatgagaaaatcattcaaagtttccataatatga 47552125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 15844318 - 15844261
Alignment:
Q  201 agagagatttttattgagattgaaaatgagaaaatcattcgatatttccaaaatatga 258  Q
    ||||| ||||| ||||| ||| ||||||||||||| |||| |||||| ||||||||||    
T  15844318 agagatattttaattgacatttaaaatgagaaaataattcaatattttcaaaatatga 15844261  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 24368060 - 24368092
Alignment:
Q  207 atttttattgagattgaaaatgagaaaatcatt 239  Q
    ||||||||||| |||||||||||||||||||||    
T  24368060 atttttattgacattgaaaatgagaaaatcatt 24368092  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 27364838 - 27364874
Alignment:
Q  104 tgaaagagctttctcagctatgaagattatcaagact 140  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  27364838 tgaaagagctttttcagcaatgaagattatcaagact 27364874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 55464880 - 55464844
Alignment:
Q  104 tgaaagagctttctcagctatgaagattatcaagact 140  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  55464880 tgaaagagctttttcagcaatgaagattatcaagact 55464844  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 18108357 - 18108244
Alignment:
Q  165 caatggttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattcgatatttccaaaatatgacaagtc 264  Q
    ||||||||||||| |  | |||||||||||||||| ||| |  ||||||||||||||||||||||||||| ||| | | |||| ||||| ||||||| ||    
T  18108357 caatggttaaatgctcttttagttacttatatatagagaaatgtttttattgagattgaaaatgagaaaaacatgc-aaattttcaaaaaatgacaattc 18108259  T
Q  265 gtagaggacaattgt 279  Q
     ||||| ||||||||    
T  18108258 atagagaacaattgt 18108244  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 187 - 284
Target Start/End: Original strand, 14811421 - 14811517
Alignment:
Q  187 ttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgtagaggacaattgtaattg 284  Q
    ||||||||||| | | |||| |||||||||||||||||||||| ||| ||||| ||||||| ||||| ||| ||||| |||||||| |||| ||||||    
T  14811421 ttacttatataaaaacagaggtttttattgagattgaaaatgaaaaagtcattagatattttcaaaaaatg-caagttgtagaggataattataattg 14811517  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 10711046 - 10710987
Alignment:
Q  208 tttttattgagattgaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgta 267  Q
    |||||||||||||||||||||||||||| |||| ||||||  |||||||| ||| |||||    
T  10711046 tttttattgagattgaaaatgagaaaattattcaatatttttaaaatatggcaaatcgta 10710987  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 17832169 - 17832245
Alignment:
Q  171 ttaaatgattgtctagttacttatatatatagagagatttttattgagattgaaaatgagaaaatcattcgatattt 247  Q
    |||||||||||| |||||||||||||  | || || ||||||||||| | |||||| ||||||| ||||| ||||||    
T  17832169 ttaaatgattgtttagttacttatattaaaagtgatatttttattgatactgaaaacgagaaaaccattcaatattt 17832245  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 277
Target Start/End: Complemental strand, 15727034 - 15726879
Alignment:
Q  122 tatgaagattatcaagactcagttgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagatt 221  Q
    |||||| |||||||||| || | ||| |||| ||||| | ||| |  |||||||||||||| |||||| ||||||| | | | | |||||||||||  ||    
T  15727034 tatgaatattatcaagaatctgatgcaaaattgaatgagagatgatcggttaaatgattgtttagttatttatataaagaaatatatttttattgatttt 15726935  T
Q  222 gaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgtagaggacaatt 277  Q
     ||||| |||||| ||||| |  |||||| ||||||| || |  ||||||||||||    
T  15726934 caaaataagaaaaccattcaaagtttccataatatgaaaaattatagaggacaatt 15726879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 27343172 - 27343211
Alignment:
Q  201 agagagatttttattgagattgaaaatgagaaaatcattc 240  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  27343172 agagatatttttattgacattgaaaatgagaaaatcattc 27343211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 3294213 - 3294281
Alignment:
Q  208 tttttattgagattgaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgtagaggacaatt 277  Q
    |||||||||||||||||||||| || |||||||  |||||  ||||||||| || |||||||| ||||||    
T  3294213 tttttattgagattgaaaatga-aatatcattcattatttttaaaatatgataaatcgtagagaacaatt 3294281  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 3497327 - 3497298
Alignment:
Q  1 ttatgattgatttcctatgatttttatgta 30  Q
    ||||||||||||||||||||||||||||||    
T  3497327 ttatgattgatttcctatgatttttatgta 3497298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 26540875 - 26540839
Alignment:
Q  104 tgaaagagctttctcagctatgaagattatcaagact 140  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  26540875 tgaaagagctttttcagcaatgaagattatcaagact 26540839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 277
Target Start/End: Complemental strand, 30294260 - 30294105
Alignment:
Q  122 tatgaagattatcaagactcagttgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatatagagagatttttattgagatt 221  Q
    |||||| |||||||||| || | |||||||||||||| | ||| |  ||||||| |||||| |||||| ||||||| | | ||| |||||||||||  ||    
T  30294260 tatgaatattatcaagaatctgatgcgaaatcgaatgagagatgatcggttaaaagattgtttagttatttatataaaaaaagatatttttattgatttt 30294161  T
Q  222 gaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgtagaggacaatt 277  Q
     ||||| |||||| ||||| |  |||||| ||||||| || | ||||| |||||||    
T  30294160 caaaataagaaaaccattcaaagtttccataatatgaaaaattgtagaagacaatt 30294105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21880156 - 21880115
Alignment:
Q  1 ttatgattgatttcctatgatttttatgtactcatgagtagt 42  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  21880156 ttatgatcgatttcctatgatttttatgtactcatgagtagt 21880115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 29095870 - 29095902
Alignment:
Q  208 tttttattgagattgaaaatgagaaaatcattc 240  Q
    |||||||||||||||||||||||||||||||||    
T  29095870 tttttattgagattgaaaatgagaaaatcattc 29095902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 21974008 - 21973972
Alignment:
Q  104 tgaaagagctttctcagctatgaagattatcaagact 140  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  21974008 tgaaagagctttttcagcaatgaagattatcaagact 21973972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 15769 - 15805
Alignment:
Q  104 tgaaagagctttctcagctatgaagattatcaagact 140  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  15769 tgaaagagctttttcagcaatgaagattatcaagact 15805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 135074 - 135038
Alignment:
Q  104 tgaaagagctttctcagctatgaagattatcaagact 140  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  135074 tgaaagagctttttcagcaatgaagattatcaagact 135038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 197060 - 197096
Alignment:
Q  104 tgaaagagctttctcagctatgaagattatcaagact 140  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  197060 tgaaagagctttttcagcaatgaagattatcaagact 197096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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