View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092_low_8 (Length: 309)

Name: NF10092_low_8
Description: NF10092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092_low_8
NF10092_low_8
[»] chr4 (15 HSPs)
chr4 (1-291)||(26056409-26056701)
chr4 (1-172)||(26085646-26085817)
chr4 (33-200)||(26112020-26112178)
chr4 (1-80)||(26049004-26049083)
chr4 (1-80)||(26068071-26068150)
chr4 (1-146)||(26128937-26129085)
chr4 (255-309)||(26113325-26113379)
chr4 (200-243)||(26111765-26111808)
chr4 (206-243)||(26085428-26085465)
chr4 (206-243)||(26121292-26121329)
chr4 (167-204)||(26086292-26086329)
chr4 (200-243)||(26128719-26128762)
chr4 (200-242)||(26038287-26038329)
chr4 (200-242)||(26056192-26056234)
chr4 (200-242)||(26067854-26067896)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 26056409 - 26056701
Alignment:
Q  1 tggttatatagggttgtgaagttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattcagtacttggactttgatactg 100  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| |||||||| ||||    
T  26056409 tggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggttgtcagtttgagcacagatattcagtacttcgactttgaaactg 26056508  T
Q  101 aatttgattgaactactagcctctcaaacat--tcttgatgggaatatgagaattcatctatacctatatatagaaaaaggaatgtgtgattttggagtg 198  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26056509 aatttgattgaactactagcctctcaaacatattcttgatgggaatatgagaattcatctatacctatatatagaaaaaggaatgtgtgattttggagtg 26056608  T
Q  199 atttttacctaatgacttctttgtttctcaatctattacctcaatgaaannnnnnnacttgagtccattatacgataattgaacatgtgcata 291  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||  |||||||||||||    
T  26056609 attttttcctaatgacatctttgtttctcaatctattacctcaatgaaaaaatttcacttgagtccattatacgataaaggaacatgtgcata 26056701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 26085646 - 26085817
Alignment:
Q  1 tggttatatagggttgtgaagttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattcagtacttggactttgatactg 100  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  26085646 tggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggtggtcagtttgagcgcagatattcagtacttcgactttgatactg 26085745  T
Q  101 aatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctatacctatatatag 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26085746 aatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctatacctatatatag 26085817  T

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Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 26112020 - 26112178
Alignment:
Q  33 taattaagaaatgaagaattgggtggtgagtttgagcacagatattcagtacttggactttgatactgaatttgattgaactactagcctctcaaacatt 132  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||         |||||| |||||||||||||||||||||||||||||||| |||    
T  26112020 taattaagaaatgaagaattgggtggtcagtttgagcacagatattca---------ctttgaaactgaatttgattgaactactagcctctcaaatatt 26112110  T
Q  133 cttgatgggaatatgagaattcatctatacctatatatagaaaaaggaatgtgtgattttggagtgat 200  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| ||||    
T  26112111 cttgatgggaatatgagaatacatctatacctatatatagataaaggaatatgtgattttggattgat 26112178  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 26049004 - 26049083
Alignment:
Q  1 tggttatatagggttgtgaagttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattca 80  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  26049004 tggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggtggtcagtttgagcacatatattca 26049083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 26068071 - 26068150
Alignment:
Q  1 tggttatatagggttgtgaagttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattca 80  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  26068071 tggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggtggtcagtttgagcacatatattca 26068150  T

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Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 26128937 - 26129085
Alignment:
Q  1 tggttatatagggttgtgaagtttt--ggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattcagtacttggactttgatac 98  Q
    ||||||||||||||| ||||| ||   |||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||  | ||  | ||    
T  26128937 tggttatatagggttctgaagcttataggagggttaattaagaaatgaagaattgggtggtcagtttgagcacatgtattcagtacttctatttctaaac 26129036  T
Q  99 tgaatttgattgaactactagcctctcaaacattc-ttgatgggaatat 146  Q
    | | || ||||||||||  ||||||||||| |||| |||||||||||||    
T  26129037 taagttcgattgaactaaaagcctctcaaatattctttgatgggaatat 26129085  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 26113325 - 26113379
Alignment:
Q  255 acttgagtccattatacgataattgaacatgtgcatatctcaacgtgacaccatt 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26113325 acttgagtccattatacgataattgaacatgtgcatatctcaacgtgacaccatt 26113379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 26111808 - 26111765
Alignment:
Q  200 tttttacctaatgacttctttgtttctcaatctattacctcaat 243  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  26111808 ttttttcctaatgacttctttgtttctcaatctattacctcaat 26111765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 26085465 - 26085428
Alignment:
Q  206 cctaatgacttctttgtttctcaatctattacctcaat 243  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26085465 cctaatgacttctttgtttctcaatctattacctcaat 26085428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 26121329 - 26121292
Alignment:
Q  206 cctaatgacttctttgtttctcaatctattacctcaat 243  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26121329 cctaatgacttctttgtttctcaatctattacctcaat 26121292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 26086292 - 26086329
Alignment:
Q  167 atatagaaaaaggaatgtgtgattttggagtgattttt 204  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  26086292 atatagaaaaaggaatgtgcgattttggagtgattttt 26086329  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 26128762 - 26128719
Alignment:
Q  200 tttttacctaatgacttctttgtttctcaatctattacctcaat 243  Q
    ||||| |||||||||||||||| ||||||||| |||||||||||    
T  26128762 ttttttcctaatgacttctttgcttctcaatccattacctcaat 26128719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 26038329 - 26038287
Alignment:
Q  200 tttttacctaatgacttctttgtttctcaatctattacctcaa 242  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||    
T  26038329 ttttttcctaatggcttctttgtttctcaatctattacatcaa 26038287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 26056234 - 26056192
Alignment:
Q  200 tttttacctaatgacttctttgtttctcaatctattacctcaa 242  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||    
T  26056234 ttttttcctaaagacttctttgtttctcagtctattacctcaa 26056192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 26067896 - 26067854
Alignment:
Q  200 tttttacctaatgacttctttgtttctcaatctattacctcaa 242  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||    
T  26067896 ttttttcctaaagacttctttgtttctcagtctattacctcaa 26067854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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