View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092_low_9 (Length: 241)
Name: NF10092_low_9
Description: NF10092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092_low_9 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 26057065 - 26056841
Alignment:
| Q |
17 |
agtaacatgcatcaaaacacattttaaaatgtagatgtcaccttacaatatcgtgttagnnnnnnnagtgtcactcaactgattttaaaattcccgtaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
26057065 |
agtaacatgcatcaaaacacattttaaaatgtagatgtcatcttacaatatcgtgttagtttttttagtgtcactcaactgattttaaaattcccataat |
26056966 |
T |
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| Q |
117 |
actaggtttaatgaaccatataattcgatagttcgtattaaaaatacagacgatagttcaatatcttgcagaaatagtcgtaaagactactctaatagaa |
216 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
26056965 |
actaggtttaatgaaccatagaattcgatagctcgtattaaaaattcagacgatagttcgatatcttgcagaaatagtcgtaaagactattctaatagaa |
26056866 |
T |
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| Q |
217 |
tcaactcaatagtcgtaaagccccc |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
26056865 |
tcaactcaatagtcgtaaagccccc |
26056841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 26113716 - 26113491
Alignment:
| Q |
17 |
agtaacatgcatcaaaacacattttaaaatgtagatgtcaccttacaatatcgtgttagnnnnnnn-agtgtcactcaactgattttaaaattcccgtaa |
115 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||| |
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| T |
26113716 |
agtaacatgcatcaaaacacattttaaaatgcagatgtcaccttacaatatcgtgttagttttttttagtgtcactcgactgattttaaaattcccataa |
26113617 |
T |
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| Q |
116 |
tactaggtttaatgaaccatataattcgatagttcgtattaaaaatacagacgatagttcaatatcttgcagaaatagtcgtaaagactactctaataga |
215 |
Q |
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| T |
26113616 |
tactaggtttaatgaaccatagaattcgatagctcgtattaaaaattcagacgatagttcgatatcttgcagaaatagtcgtaaagacttttctaataga |
26113517 |
T |
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| Q |
216 |
atcaactcaatagtcgtaaagccccc |
241 |
Q |
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| T |
26113516 |
atcaactcaatagtcgtaaagccccc |
26113491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 26090555 - 26090494
Alignment:
| Q |
85 |
tgtcactcaactgattttaaaattcccgtaatactaggtttaatgaaccatataattcgata |
146 |
Q |
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|||||||||| ||||||||||||||||||||||||||| || |||||||||| | ||||||| |
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| T |
26090555 |
tgtcactcaaatgattttaaaattcccgtaatactaggatttatgaaccatagagttcgata |
26090494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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