View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10093_high_2 (Length: 372)
Name: NF10093_high_2
Description: NF10093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10093_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 30 - 354
Target Start/End: Original strand, 4758935 - 4759263
Alignment:
| Q |
30 |
tatgtaccttatgttatgtgtgcttaaaaaatgtggtgtagaattacaaagcaaaagcaggatcattcaatccatttggattaggaagcagattatgtcc |
129 |
Q |
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| T |
4758935 |
tatgtaacttatgttatgtgtacttaaaaaatgtggtgtagaattacaaagcaaaagcaggatcattcaatccatttggattaggaagcagattatgtcc |
4759034 |
T |
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| Q |
130 |
aggaagcgatctagctaaacttgagatcactatttaccttcatcattttcttcttaactacaggt----taatacacacttgcttccattttgcaaccat |
225 |
Q |
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| T |
4759035 |
aggaagtgatctagctaaacttgagatcactatttaccttcatcattttcttcttaactacaggtaggttaatacacacttgcttccattttgcaaccat |
4759134 |
T |
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| Q |
226 |
tgacttattcatgcatgcaaaggaataaaataatgtattcatatgctaagaaattaaataaataatcaattttgtctatgattgtttttgtcttgcagga |
325 |
Q |
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| T |
4759135 |
tgacttattgatgcatgcaaaggaataaaataatgtattcatatgctaagaaattaaataaataatcaattttgtctatgattgtttttgtcttgcagga |
4759234 |
T |
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| Q |
326 |
tggagagaattaatccagattgtccagtt |
354 |
Q |
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| T |
4759235 |
tggagagaattaatccagattgtccagtt |
4759263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 38 - 221
Target Start/End: Original strand, 4741341 - 4741524
Alignment:
| Q |
38 |
ttatgttatgtgtgcttaaaaaatgtggtgtagaattacaaagcaaaagcaggatcattcaatccatttggattaggaagcagattatgtccaggaagcg |
137 |
Q |
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| T |
4741341 |
ttatgttatgtgtactttaaaaatgtgatgcagaatttcaaagcaagagtaggacaatttcttccatttggatatggaagtaggtattgtccaggaagtg |
4741440 |
T |
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| Q |
138 |
atctagctaaacttgagatcactatttaccttcatcattttcttcttaactacaggttaatacacacttgcttccattttgcaa |
221 |
Q |
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| T |
4741441 |
atttggctaaacttgagatcactatttaccttcatcattttcttcttaactacaggttaatacacacttgcttccattttgcaa |
4741524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 38 - 221
Target Start/End: Original strand, 4750606 - 4750789
Alignment:
| Q |
38 |
ttatgttatgtgtgcttaaaaaatgtggtgtagaattacaaagcaaaagcaggatcattcaatccatttggattaggaagcagattatgtccaggaagcg |
137 |
Q |
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| T |
4750606 |
ttatgttatgtgtactttaaaaatgtgatgcagaatttcaaagcaagagtaggacaatttcttccatttggatatggaagtaggtattgtccaggaagtg |
4750705 |
T |
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| Q |
138 |
atctagctaaacttgagatcactatttaccttcatcattttcttcttaactacaggttaatacacacttgcttccattttgcaa |
221 |
Q |
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| T |
4750706 |
atttggctaaacttgagatcactatttaccttcatcattttcttcttaactacaggttaatacacacttgcttccattttgcaa |
4750789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 4741574 - 4741627
Alignment:
| Q |
298 |
tgtctatgattgtttttgtcttgcaggatggagagaattaatccagattgtcca |
351 |
Q |
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| T |
4741574 |
tgtctctgattgtttttggtgtgcaggatggagagaattaatccagattgtcca |
4741627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 4750839 - 4750892
Alignment:
| Q |
298 |
tgtctatgattgtttttgtcttgcaggatggagagaattaatccagattgtcca |
351 |
Q |
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| T |
4750839 |
tgtctctgattgtttttggtgtgcaggatggagagaattaatccagattgtcca |
4750892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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