View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10093_high_3 (Length: 366)
Name: NF10093_high_3
Description: NF10093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10093_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 124 - 355
Target Start/End: Original strand, 46471104 - 46471336
Alignment:
| Q |
124 |
ggatggtaataagtaacaactgaatgaaggaggcaaatcatacctagtcctataggtatgcttctcttaccgttgcaatgacccaatttggtcctgtcgc |
223 |
Q |
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| T |
46471104 |
ggatggtaataagtaacaactgaatgaaggaggcaaatcatacctagtcctataggtatgcttctcttaccgttgcaatgacccaatttggtcctgtcgc |
46471203 |
T |
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| Q |
224 |
gatgcaactgggaaatgccattcatggccttgttggaatcagagatgcaattcatccaaaaatgaccggttcacatattagagctatactcattactc-a |
322 |
Q |
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| T |
46471204 |
gatgcaactgggaaatgccattcatggccttgttggaatcagagatgcaattcatccaaaaatgaccggttcacagattagagctatactcattactcta |
46471303 |
T |
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| Q |
323 |
ctgtaatttttggagtttcctgcttagaacctt |
355 |
Q |
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| T |
46471304 |
ctgtaatttttggagtttcctgcttagaacctt |
46471336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 46470840 - 46470890
Alignment:
| Q |
7 |
tgaataacatacaccgtaagttaaatttat-aggaaatcttatatcttaaat |
57 |
Q |
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| T |
46470840 |
tgaataac-tacaccgtaagttaaatttataaagaaatcttatatcttaaat |
46470890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 349
Target Start/End: Original strand, 1474869 - 1474954
Alignment:
| Q |
263 |
cagagatgcaattcatccaaaaatgaccggttcacatattagagctatactcattactcactgtaatttttggagtttcctgcttag |
349 |
Q |
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| T |
1474869 |
cagacatgcaattcatccaaaaatgattgagtcacagattagagctacactcattgcttgct-taatttttgtagtttcctgcttag |
1474954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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