View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10093_high_4 (Length: 290)
Name: NF10093_high_4
Description: NF10093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10093_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 38 - 278
Target Start/End: Complemental strand, 53040033 - 53039793
Alignment:
| Q |
38 |
gggtacagatcaaggagcttatttaattagtataaaattgagtggttattgttccaattaaaccaataacattaaatgttttatacctacatgtaaattt |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53040033 |
gggtacagatcaaggagcttatttaattagtataaaattgaatggttattgttccaattaaatcaataacattaaatgttttatacctacatgtaaattt |
53039934 |
T |
|
| Q |
138 |
atactaaacatttatctgacattaaataaagggtgtaaaaagaattctagcaattaatgcacattgaaatgaatttctttttcttataataaagaccaaa |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
53039933 |
atactaaacatttatctgacattaaataaagggtataaaaagaattctagcaattaatgcacattgaaatgaatttttttttcttataataaagaccaaa |
53039834 |
T |
|
| Q |
238 |
aaatacacacaatttcttataatagggaccagagatagtat |
278 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
53039833 |
aaatacgcacaatttcttataatagggaccagagatagtat |
53039793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University