View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10093_high_7 (Length: 250)
Name: NF10093_high_7
Description: NF10093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10093_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 53040142 - 53040389
Alignment:
| Q |
1 |
aaagtctcgaagatctgatggtttgaaggaatctgaatcacattttatattgggagtctgcgttgtaagcatatagtcactgtaaacagaagctaagaat |
100 |
Q |
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| T |
53040142 |
aaagtctcgaagatctgatggtttgaaggaatctgaatcacattttatattgggagtctgcgttgtaagcatatagtcactgtaaacagaagctaagaat |
53040241 |
T |
|
| Q |
101 |
gcagatgcaacacgatgctgcaaagcgttccattcactcacccatatcagaccatctatatnnnnnnnnnnnnnnnntgtaattagacaacatattgcag |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
53040242 |
gcagatgcaacaggatgctgcaaagcgttccattcactcacccatatcagaccatctatataaaagaaaaagaaaaatgcaattagacaacatattgcag |
53040341 |
T |
|
| Q |
201 |
tagaaatatattactaaaaatggaatttccatagtctgtgctcctcca |
248 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
53040342 |
tagaaatatattactaaaaatggaatttccatagtttgtgttcctcca |
53040389 |
T |
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