View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10093_low_11 (Length: 239)
Name: NF10093_low_11
Description: NF10093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10093_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 48575055 - 48574841
Alignment:
| Q |
1 |
ccaccagaaaccttctcctattcctattcatttaacaccaaatttatatgaaaaaatgttatagatagttagatacgtcaacacaatggataaataaact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| |
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| T |
48575055 |
ccaccagaaaccttctcctattcctattcatttaacaccaaatttatatgaaaatatgttatagata--------cgtctacacaatggataaataaact |
48574964 |
T |
|
| Q |
101 |
gttgtagaacaaaagaaaacaacacatgtgaatcctcaaatagaggcgttttctcgtatagggtcctcatggaatcgatagtccctgtctcgagcactcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48574963 |
gttgtagaacaaaagaaaacaacacatgtgaatcctcaaatagaggcgttttctcgtatagggtcctcatggaatcgatagtccctgtctcgagcactcc |
48574864 |
T |
|
| Q |
201 |
tatattgaagtcggtgatgtagt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
48574863 |
tatattgaagtcggtgatgtagt |
48574841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45150181 - 45149967
Alignment:
| Q |
1 |
ccaccagaaaccttctcctattcctattcatttaacaccaaatttatatgaaaaaatgttatagatagttagatacgtcaacacaatggataaataaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| |
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| T |
45150181 |
ccaccagaaaccttctcctattcctattcatttaacaccaaatttatatgaaaatatgttatagata--------cgtctacacaatggataaataaact |
45150090 |
T |
|
| Q |
101 |
gttgtagaacaaaagaaaacaacacatgtgaatcctcaaatagaggcgttttctcgtatagggtcctcatggaatcgatagtccctgtctcgagcactcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45150089 |
gttgtagaacaaaagaaaacaacacatgtgaatcctcaaatagaggcgttttctcgtatagggtcctcatggaatcgatagtccctggctcgagcactcc |
45149990 |
T |
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| Q |
201 |
tatattgaagtcggtgatgtagt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
45149989 |
tatattgaagtcggtgatgtagt |
45149967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 50297882 - 50298097
Alignment:
| Q |
1 |
ccaccagaaaccttctcctattcctattcatttaacaccaaatttatatgaaaaaatgttatagatagttagatacgtcaacacaatggataaataaact |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| |||||||| ||| | |||||||||||||||||||| |
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| T |
50297882 |
ccaccagaaaccttcttctattcctattaatttaacaccaaatttatatgaaaatatgctatagatat---gat----ctacacaatggataaataaact |
50297974 |
T |
|
| Q |
101 |
gttgtagaacaaaagaaaacaacacatgtgaatcctcaaatagaggcgttttctcgtatagggtcctcatggaatcgatagtccctgtctcgagcactcc |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
50297975 |
gttgtagaacaaaagaagacaacacatgtgaatcctcaaatagaggcgttttctcgtatagggtcatcatggaatcgatagtccctggctcgagcactcc |
50298074 |
T |
|
| Q |
201 |
tatattgaagtcggtgatgtagt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
50298075 |
tatattgaagtcggtgatgtagt |
50298097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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