View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10093_low_12 (Length: 220)
Name: NF10093_low_12
Description: NF10093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10093_low_12 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 53219934 - 53219714
Alignment:
| Q |
1 |
gtagggtttatgatgaacaatcatggatgatttaaagaatagcttcgtaatgttgaattgttgtcataatttgtcttgaataaagtta-tttatgaattt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || ||| ||||||||||| |
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| T |
53219934 |
gtagggtttatgatgaacaatcatggatgatttaaagaatagcttcgtaatgttgatttgttgtcataatttgtcttgactgaacttaatttatgaattt |
53219835 |
T |
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| Q |
100 |
tattaaaagtttaaatactatgcaggattgttgcaaagcaccattttggagcgtgtaggatgtatctggttcaatcgatcagaggcaaaggatcgagaaa |
199 |
Q |
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| T |
53219834 |
tattaaaagtttaaatactatgcaggattgttgcaaagcaccattttggagagtgtaggatgtatctggttcaatcgatcagaggcaaaggatcgagaaa |
53219735 |
T |
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| Q |
200 |
ttgtggcaagaaagttagtat |
220 |
Q |
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||||||||||||||||||||| |
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| T |
53219734 |
ttgtggcaagaaagttagtat |
53219714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 15412027 - 15411811
Alignment:
| Q |
1 |
gtagggtttatgatgaacaatcatggatgatttaaagaatagcttcgtaatgttgaattgttgtcataatttgtcttgaataaagttatttatgaatttt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||||||||||||| |
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| T |
15412027 |
gtagggtttataatgaacaatcatggatgatttaaagaatagcttcgtaatgttgaattgttttcataacttgtcttgactaaa---atttatgaatttt |
15411931 |
T |
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| Q |
101 |
attaaaagtttaaatactatgcaggattgttgcaaagcaccattttggagcgtgtaggatgtatctggttcaatcgatcagaggcaaaggatcgagaaat |
200 |
Q |
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| T |
15411930 |
attaaaagtataactactgtacaggattgttgcaaagcaccattttggagagtgtaggatgcatttggttcaatcgatcagaagcaaaggatcgagaaat |
15411831 |
T |
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| Q |
201 |
tgtggcaagaaagttagtat |
220 |
Q |
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| T |
15411830 |
tgtggcaagaaagttagtat |
15411811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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