View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10093_low_2 (Length: 381)
Name: NF10093_low_2
Description: NF10093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10093_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Original strand, 55017182 - 55017536
Alignment:
| Q |
20 |
ggttcttgcttttaggtggttgccggttccaaattccccacccgacccaacagagacatttgctttcactgttgttatgaagaatcctctcaaggcagtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55017182 |
ggttcttgcttttaggtggttgccggttccaaattccccacccgacccaacagagacatttgctttcactgttgttatgaagaatcctctcaaggcagtt |
55017281 |
T |
|
| Q |
120 |
attgttcctagatcaatttaagttgttacacttacaaatactttatcatttacatggtattattttcttttgcatactacaatgctagtaatttgttaac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
55017282 |
attgttcctagatcaatttaagttgttacacttacaaatactttatcatttacatggtattattttcttttgcatattgcaatgctagtaatttgttaac |
55017381 |
T |
|
| Q |
220 |
taaattaagagtatttagtactccataagactggtaattcaggggtttgttcattgtttatttttcattttggtggtgattaatattgctggtttaaatg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
55017382 |
taaattaagagtatttagtactccataagactggtaattcaggggtttgttcattgtttatttttctttttggtggtgattaatattgctggtttaaatg |
55017481 |
T |
|
| Q |
320 |
tataatactagtatcaaattattaatttttgtttatgtaacaagattccatgtgt |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55017482 |
tataatactagtatcaaattattaatttttgtttatgtaacaagattccatgtgt |
55017536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University