View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10094_high_1 (Length: 379)
Name: NF10094_high_1
Description: NF10094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10094_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 101 - 284
Target Start/End: Complemental strand, 55439264 - 55439081
Alignment:
| Q |
101 |
tctaagtattgaaggatattttaccagcagctcaaatggtattggatcaa-tgccaaacgattcccgaatccaataaagtgaacaacatgatttttaagt |
199 |
Q |
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| T |
55439264 |
tctaagtatcgaaggatattt-acctgcagctcaaatggtattggatcaaatgccaagcgattcccaaatccaataaagtgaacaacttgatttttaagt |
55439166 |
T |
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| Q |
200 |
atatttggcaggatgtgtttcaagtaaaaacccggcttggcctcctttcccatgtcaacatctgttacctggtaaagtcttctaa |
284 |
Q |
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| T |
55439165 |
ataataggcaggatgtgtttcaagtaaaagcttggcttggcctcctttcccatgtcaacatctgttacctggtaaagtcttctaa |
55439081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 226 - 364
Target Start/End: Original strand, 55472286 - 55472423
Alignment:
| Q |
226 |
aaaacccggcttggcctcctttcccatgtcaacatctgttacctggtaaagtcttctaataaaaatttataagctgaattgaccgtcacaaaatcatgat |
325 |
Q |
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| T |
55472286 |
aaaacccgacttggcctcctttcccatgtcaacatctgttacctggtaaagtcttctaataaaaatttataagctgaattgaccgtcacaaaatcataat |
55472385 |
T |
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| Q |
326 |
ggaagagccaatggactatatatgtggaatggatatggt |
364 |
Q |
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| T |
55472386 |
ggaagagcc-atggactatatatgtggaatggatatggt |
55472423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 55472109 - 55472286
Alignment:
| Q |
1 |
ctctagatgaagtcctcgattaataacagtaaagcattgtcagactagggactcagatctttcttgaaaatgattgtaatatctaagtatcgnnnnnnnn |
100 |
Q |
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| T |
55472109 |
ctctagatgaagtcctcgattaataacagtaaagcattgtcagactagggaatcagatctttcttgaaaatgattgtaatatc----------------- |
55472191 |
T |
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| Q |
101 |
tctaagtattgaaggatattttaccagcagctcaaatggtattggatcaatgccaaacgattcccgaatccaataaagtgaacaacatgatttttaagta |
200 |
Q |
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| T |
55472192 |
--taagtattgaaggatattttaccagcagctcaaatggtattggatcaatgccaaacgattcccg-----aataaagtgaacaacatgatttttaagta |
55472284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 55438874 - 55438807
Alignment:
| Q |
284 |
ataaaaatttataagctgaattgaccgtcacaaaatcatgatggaagagccaatggactatatatgtgg |
352 |
Q |
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| T |
55438874 |
ataagaatttataagttaaattgacggtcacaaaatcataatagaagagcc-atggactacagatgtgg |
55438807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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