View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10094_high_4 (Length: 240)
Name: NF10094_high_4
Description: NF10094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10094_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40238107 - 40237885
Alignment:
| Q |
1 |
tactaacaaattctacatctttgagcttaagaaataagcccaaaatgcatgaatgttccatttgtgggcaaattttttcattggggcaagcattgggtgg |
100 |
Q |
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| T |
40238107 |
tactaacaaattctacatctttgagcttaggaaataagcccaaaatgcatgaatgttccatttgtgggcaaaatttttcattggggcaagcattgggtgg |
40238008 |
T |
|
| Q |
101 |
acacatgagaaggcataaagctattatgaacgaagaggtttcttcaatggaacaagttgttatgaaattaccagttttaaagagattgaatagtgcaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40238007 |
acacatgagaaggcataaagctattatgaacgaagaggtttcttcaatggaacaagttgttatgaaattaccagttttaaagagattgaatagtgcaagg |
40237908 |
T |
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| Q |
201 |
gttatgtgcttggacttgaactt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
40237907 |
gttatgtgcttggacttgaactt |
40237885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 25824275 - 25824170
Alignment:
| Q |
31 |
gaaataagcccaaaatgcatgaatgttccatttgtgggcaaattttttcattggggcaagcattgggtggacacatgagaaggcataaagctattatgaa |
130 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25824275 |
gaaataagctcaaaatgcatgaatgttccatttgtgggcaaagattttcattaggacaagcattgggtggacacatgagaaggcataaagctattatcaa |
25824176 |
T |
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| Q |
131 |
cgaaga |
136 |
Q |
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|||||| |
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| T |
25824175 |
cgaaga |
25824170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 29213471 - 29213517
Alignment:
| Q |
177 |
ttaaagagattgaatagtgcaagggttatgtgcttggacttgaactt |
223 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
29213471 |
ttaaaaagattgaatagtaagagggttatgtgcttggacttgaactt |
29213517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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