View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10094_high_6 (Length: 205)
Name: NF10094_high_6
Description: NF10094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10094_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 44 - 190
Target Start/End: Complemental strand, 3744900 - 3744754
Alignment:
| Q |
44 |
gtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtttctgctgtttc |
143 |
Q |
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| T |
3744900 |
gtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtttctgctgtttg |
3744801 |
T |
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| Q |
144 |
tcaagatggggttctgagtgttactgttcagaaattgcctcctcctc |
190 |
Q |
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| T |
3744800 |
tcaagatggggttctgagtgttactgttcagaaattgcctcctcctc |
3744754 |
T |
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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 55 - 189
Target Start/End: Complemental strand, 48303093 - 48302956
Alignment:
| Q |
55 |
tatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactga---tgctgtttctgctgtttctcaagatg |
151 |
Q |
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| T |
48303093 |
tatttgaagatggaaagaagggttggtaagtttatgaggaaatttgtgttaccagagaatgctgatgttgaaggtggtgtttctgctgtttgtcaagatg |
48302994 |
T |
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| Q |
152 |
gggttctgagtgttactgttcagaaattgcctcctcct |
189 |
Q |
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| T |
48302993 |
gtgttcttactgttactgttaataagttgcctcctcct |
48302956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 10462342 - 10462432
Alignment:
| Q |
103 |
cttcctgagaatgctaatactgatgctgtttctgctgtttctcaagatggggttctgagtgttactgttc---agaaattgcctcctcctc |
190 |
Q |
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| T |
10462342 |
cttcctgagaatgctaatgctgatgctgtttcggctgtgtgtcgagatggggtgcttactgttactgctctcaagaaattgcctcctcctc |
10462432 |
T |
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