View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10094_low_1 (Length: 521)

Name: NF10094_low_1
Description: NF10094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10094_low_1
NF10094_low_1
[»] chr6 (14 HSPs)
chr6 (3-393)||(3254677-3255067)
chr6 (13-340)||(7872227-7872545)
chr6 (215-369)||(14435598-14435752)
chr6 (210-330)||(7815401-7815521)
chr6 (215-355)||(10416424-10416564)
chr6 (211-313)||(7805760-7805862)
chr6 (200-385)||(7860861-7861046)
chr6 (453-505)||(3255127-3255179)
chr6 (204-372)||(7818289-7818457)
chr6 (215-313)||(7819966-7820064)
chr6 (458-505)||(14438489-14438536)
chr6 (209-261)||(14438251-14438303)
chr6 (455-505)||(7814823-7814873)
chr6 (456-505)||(7872067-7872116)
[»] chr4 (3 HSPs)
chr4 (37-386)||(14018599-14018948)
chr4 (215-335)||(51016526-51016646)
chr4 (455-490)||(14018495-14018530)
[»] chr1 (5 HSPs)
chr1 (209-386)||(37996589-37996766)
chr1 (215-330)||(28720059-28720174)
chr1 (225-271)||(49170486-49170532)
chr1 (455-498)||(37996831-37996874)
chr1 (97-138)||(37996486-37996527)
[»] scaffold1089 (1 HSPs)
scaffold1089 (94-370)||(503-779)
[»] scaffold1377 (1 HSPs)
scaffold1377 (209-335)||(1342-1468)
[»] chr3 (1 HSPs)
chr3 (174-355)||(2467488-2467669)
[»] chr5 (6 HSPs)
chr5 (210-330)||(14308527-14308647)
chr5 (264-355)||(24005013-24005104)
chr5 (221-270)||(17392685-17392734)
chr5 (235-271)||(20112217-20112253)
chr5 (460-500)||(24005199-24005239)
chr5 (233-269)||(32429441-32429477)
[»] chr7 (3 HSPs)
chr7 (93-161)||(19316472-19316540)
chr7 (215-275)||(19316585-19316645)
chr7 (235-270)||(8794149-8794184)


Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 3 - 393
Target Start/End: Original strand, 3254677 - 3255067
Alignment:
Q  3 gagagtttgaatatgttgtccaaactatcaaactaaaagtttgcatattagactagaaagtaaataaaaacactgataattctagttaacatacttaaat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3254677 gagagtttgaatatgttgtccaaactatcaaactaaaagtttgcatattagactagaaagtaaataaaaacactgataattctagttaacatacttaaat 3254776  T
Q  103 tcaaatgaaattttacattttggagatatccttggagtggagaacaattcttctctaatatgatttattttcaaaagcattccatctgaggagccaatag 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3254777 tcaaatgaaattttacattttggagatatccttggagtggagaacaattcttctctaatatgatttattttcaaaagcattctatctgaggagccaatag 3254876  T
Q  203 caacgccgattctcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtaca 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3254877 caacgccgattctcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtaca 3254976  T
Q  303 tgatgtgaggtgtgacaaaacacattcatgaacagaaattgggcatttgcatttcctggacgagctggtctccgtccactgtcagaaggat 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3254977 tgatgtgaggtgtgacaaaacacattcatgaacagaaattgggcatttgcatttcctggacgagctggtctccatccactgtcagaaggat 3255067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 340
Target Start/End: Complemental strand, 7872545 - 7872227
Alignment:
Q  13 atatgttgtccaaactatcaaactaaaagtttgcatattagactagaaagtaaataaaaacactgataattctagttaacatacttaaattcaaatgaaa 112  Q
    |||||||||||||| ||| |||||||| | ||||||||| || |||||| |||   | ||||||||||| |||||| |  ||||||||||| ||||||||    
T  7872545 atatgttgtccaaagtatgaaactaaacggttgcatattggaatagaaactaatacataacactgataaatctagtaacaatacttaaatttaaatgaaa 7872446  T
Q  113 ttttacattttggagatatccttggagtggagaacaattcttctctaatatgatttattttcaaaagcattccatctgaggagccaatagcaacgccgat 212  Q
     ||||||| ||| ||||||| |||||   ||| | ||||||||| |||| ||| || |   || | ||||||  |  |         ||| |||||||||    
T  7872445 gtttacatcttgaagatatcgttggacaagaggataattcttctttaatctgacttttccccagatgcattcggttag---------tagtaacgccgat 7872355  T
Q  213 tctcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtacatgatgtgagg 312  Q
    | ||||||||| ||||||||  |||||||||||||||||| |||||||| ||||||||||||| ||| |||  | ||||||||| ||||||||| | |||    
T  7872354 tttcatgtcttctaaaagacctgcattctgcaaaatatatgttgcaaatcgaagatcatttgctgagccatggaagtttaaaatagtacatgatctaagg 7872255  T
Q  313 tgtgacaaaacacattcatgaacagaaa 340  Q
    || ||| |||||||||||||||| ||||    
T  7872254 tgagacgaaacacattcatgaactgaaa 7872227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 215 - 369
Target Start/End: Original strand, 14435598 - 14435752
Alignment:
Q  215 tcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtacatgatgtgaggtg 314  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||  | |||| ||||||||| ||||||||| |||||||    
T  14435598 tcatatcttgtaaaagcctcgcattctgcaatatatattttgcaaattgaaggtcatttgccgatccttcaaagtttaaaattgtacatgatctgaggtg 14435697  T
Q  315 tgacaaaacacattcatgaacagaaattgggcatttgcatttcctggacgagctg 369  Q
     ||| |||||||||||  ||| ||| |||| ||||| |||| | |||| ||||||    
T  14435698 agacgaaacacattcaataaccgaatttggccatttccattccttggatgagctg 14435752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 330
Target Start/End: Complemental strand, 7815521 - 7815401
Alignment:
Q  210 gattctcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtacatgatgtg 309  Q
    |||| ||||||| || || |||||||||||||||||||||||||||| |||| ||||||||||| ||||| | |  | ||||||||| ||||||||| ||    
T  7815521 gattttcatgtcctgcaagagactcgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctg 7815422  T
Q  310 aggtgtgacaaaacacattca 330  Q
    ||||| ||  |||||||||||    
T  7815421 aggtgagatgaaacacattca 7815401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 215 - 355
Target Start/End: Complemental strand, 10416564 - 10416424
Alignment:
Q  215 tcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtacatgatgtgaggtg 314  Q
    |||||||||||||||||| ||  ||||| |||||||||||||||||||||||||||||| ||||| |||| | |||||| || ||||||||| | ||||     
T  10416564 tcatgtcttgtaaaagacccgatttctgtaaaatatattttgcaaattgaagatcattttccgagccatcgaagtttaatatagtacatgatctaaggtt 10416465  T
Q  315 tgacaaaacacattcatgaacagaaattgggcatttgcatt 355  Q
     ||| || | |||||| ||||  |||||||| |||| ||||    
T  10416464 agacgaatcccattcaagaaccaaaattgggtatttccatt 10416424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 7805760 - 7805862
Alignment:
Q  211 attctcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtacatgatgtga 310  Q
    |||||||| || |||||||||||| ||||||  |||||||||||||||||| ||||||||||  ||||| | |||| ||||||||| ||||||||| |||    
T  7805760 attctcatctcctgtaaaagactcccattctttaaaatatattttgcaaatcgaagatcattatccgagccgtcaaagtttaaaatagtacatgatctga 7805859  T
Q  311 ggt 313  Q
    |||    
T  7805860 ggt 7805862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 385
Target Start/End: Complemental strand, 7861046 - 7860861
Alignment:
Q  200 tagcaacgccgattctcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggt 299  Q
    |||||| || |||| |||||||| |||| ||| | ||||||||||||||||||||| |||||| ||||||||||| |||| | | || ||||| ||   |    
T  7861046 tagcaaagcggattttcatgtctcgtaagagagttgcattctgcaaaatatattttacaaatttaagatcatttgtcgagccttgaaagtttagaacaat 7860947  T
Q  300 acatgatgtgaggtgtgacaaaacacattcatgaacagaaattgggcatttgcatttcctggacgagctggtctccgtccactgtc 385  Q
    ||||||| ||||||| ||| |||  |||| | |||| |||||||||||||| |||| | |||  |||||||| | | |||||||||    
T  7860946 acatgatctgaggtgagacgaaatgcatttaggaaccgaaattgggcatttccattccttggttgagctggtattcatccactgtc 7860861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 453 - 505
Target Start/End: Original strand, 3255127 - 3255179
Alignment:
Q  453 tgtactactcaacaaacctttttaatataaagaatttgaagattgggagaatg 505  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3255127 tgtactactcaacaaacctttttaataaaaagaatttgaagattgggagaatg 3255179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 204 - 372
Target Start/End: Complemental strand, 7818457 - 7818289
Alignment:
Q  204 aacgccgattctcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtacat 303  Q
    |||||||||| |||||||| ||||||| ||| |||||| |||||||||| ||| |||| |||||| ||||  | || | | || ||||||||| ||||||    
T  7818457 aacgccgattttcatgtctcgtaaaagcctcacattcttcaaaatatatgttgtaaatcgaagataatttatcaagccttgaaagtttaaaatagtacat 7818358  T
Q  304 gatgtgaggtgtgacaaaacacattcatgaacagaaattgggcatttgcatttcctggacgagctggtc 372  Q
    ||| ||||||  ||| ||||||||||| ||||  ||||| || |||| |||| | |||| |||||||||    
T  7818357 gatttgaggttagacgaaacacattcaagaaccaaaatttggtatttccattccttggatgagctggtc 7818289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 313
Target Start/End: Original strand, 7819966 - 7820064
Alignment:
Q  215 tcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtacatgatgtgaggt 313  Q
    |||| ||||||||||||  ||||||||  |||| ||||||||||||| ||||||||||| ||||| | |||| ||||||||| ||||||||| ||||||    
T  7819966 tcatttcttgtaaaagatacgcattctttaaaacatattttgcaaatcgaagatcattttccgagccttcaaagtttaaaatagtacatgatctgaggt 7820064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 14438489 - 14438536
Alignment:
Q  458 tactcaacaaacctttttaatataaagaatttgaagattgggagaatg 505  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||||    
T  14438489 tactcaacaaaccttattaatataaagaatttgaagcttgggacaatg 14438536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 14438251 - 14438303
Alignment:
Q  209 cgattctcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaat 261  Q
    ||||| |||| ||||||||||| |||||||||||||||||||||  |||||||    
T  14438251 cgattgtcatatcttgtaaaagcctcgcattctgcaaaatatatgatgcaaat 14438303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 505
Target Start/End: Complemental strand, 7814873 - 7814823
Alignment:
Q  455 tactactcaacaaacctttttaatataaagaatttgaagattgggagaatg 505  Q
    |||||||||  |||||||||||||  ||||||||||||| |||||||||||    
T  7814873 tactactcagaaaacctttttaattgaaagaatttgaagcttgggagaatg 7814823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 505
Target Start/End: Complemental strand, 7872116 - 7872067
Alignment:
Q  456 actactcaacaaacctttttaatataaagaatttgaagattgggagaatg 505  Q
    ||||||||||| ||||||||||||  |||||||||||| |||||| ||||    
T  7872116 actactcaacatacctttttaataataagaatttgaagcttgggacaatg 7872067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 37 - 386
Target Start/End: Complemental strand, 14018948 - 14018599
Alignment:
Q  37 aaaagtttgcatattagactagaaagtaaataaaaacactgataattctagttaacatacttaaattcaaatgaaattttacattttggagatatccttg 136  Q
    ||||| || ||||||||| || | |||||  ||||||||| ||||||||||| || | |||||||||||||||||| |||||||  | ||||||||||||    
T  14018948 aaaaggtttcatattagaataaagagtaacgaaaaacactaataattctagtaaataaacttaaattcaaatgaaagtttacatcctcgagatatccttg 14018849  T
Q  137 gagtggagaacaattcttctctaatatgatttattttcaaaagcattccatctgaggagccaatagcaacgccgattctcatgtcttgtaaaagactcgc 236  Q
     |  |||| | ||||||||| |||| |||  | ||| |||||| ||| ||| | ||||   |||| ||| ||||||| ||||||||||||||| ||  ||    
T  14018848 aaaaggaggataattcttctttaatctgacctttttccaaaagtatttcatttaaggacttaataacaaagccgattttcatgtcttgtaaaatacgggc 14018749  T
Q  237 attctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtacatgatgtgaggtgtgacaaaacacattcatgaaca 336  Q
    |||||||||||| |||||||||||| |||||||||||||||||  ||||| ||||||||| ||||||||| | || || ||| ||||||||||| ||       
T  14018748 attctgcaaaatgtattttgcaaatcgaagatcatttgccgagttatcaaagtttaaaatagtacatgatctaagatgagacgaaacacattcaagattt 14018649  T
Q  337 gaaattgggcatttgcatttcctggacgagctggtctccgtccactgtca 386  Q
    |||||||||||||| |||| | ||||||||| ||||| | ||||||||||    
T  14018648 gaaattgggcatttccattccttggacgagcgggtcttcctccactgtca 14018599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 335
Target Start/End: Original strand, 51016526 - 51016646
Alignment:
Q  215 tcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtacatgatgtgaggtg 314  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||||| ||| | ||| |    || | | || || |||||| ||||||||| |||||||    
T  51016526 tcatgtcttgtaaaagactcgcattccgcaagatatattttacaaatcgaaaaccatctttgaagccttgaaagtataaaatagtacatgatttgaggtg 51016625  T
Q  315 tgacaaaacacattcatgaac 335  Q
     | ||| ||||||||||||||    
T  51016626 agtcaagacacattcatgaac 51016646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 490
Target Start/End: Complemental strand, 14018530 - 14018495
Alignment:
Q  455 tactactcaacaaacctttttaatataaagaatttg 490  Q
    ||||||||||||||||||||||||| ||||||||||    
T  14018530 tactactcaacaaacctttttaataaaaagaatttg 14018495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 209 - 386
Target Start/End: Original strand, 37996589 - 37996766
Alignment:
Q  209 cgattctcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtacatgatgt 308  Q
    ||||||||||||||||||||||||| ||||| |||||||||||| |||||||| |||||||||  |||||| | |||| ||||||||| ||||||||| |    
T  37996589 cgattctcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatct 37996688  T
Q  309 gaggtgtgacaaaacacattcatgaacagaaattgggcatttgcatttcctggacgagctggtctccgtccactgtca 386  Q
     ||||| ||| ||| ||| ||| |||| | || ||||||||| |||| | |||| ||| |||||||||||||||||||    
T  37996689 taggtgagacgaaatacactcaagaactgcaactgggcatttccattccttggatgagttggtctccgtccactgtca 37996766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 215 - 330
Target Start/End: Original strand, 28720059 - 28720174
Alignment:
Q  215 tcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtacatgatgtgaggtg 314  Q
    |||| ||||||||||| ||||||||||||| |||||| ||||||||| | ||||||||| ||||| | ||||  |||||||| ||||||||  |||||||    
T  28720059 tcatttcttgtaaaagtctcgcattctgcagaatatactttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctgaggtg 28720158  T
Q  315 tgacaaaacacattca 330  Q
     |||  ||||||||||    
T  28720159 agactcaacacattca 28720174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 49170486 - 49170532
Alignment:
Q  225 taaaagactcgcattctgcaaaatatattttgcaaattgaagatcat 271  Q
    |||||| | ||||||||||||||||||||||||||||||||| ||||    
T  49170486 taaaagccgcgcattctgcaaaatatattttgcaaattgaagttcat 49170532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 498
Target Start/End: Original strand, 37996831 - 37996874
Alignment:
Q  455 tactactcaacaaacctttttaatataaagaatttgaagattgg 498  Q
    ||||||||||||||||||| ||||| ||||||||||||| ||||    
T  37996831 tactactcaacaaacctttctaatagaaagaatttgaagcttgg 37996874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 37996486 - 37996527
Alignment:
Q  97 ttaaattcaaatgaaattttacattttggagatatccttgga 138  Q
    |||||||||||||||| ||||||| ||| |||||||||||||    
T  37996486 ttaaattcaaatgaaagtttacatgttgtagatatccttgga 37996527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1089 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 94 - 370
Target Start/End: Original strand, 503 - 779
Alignment:
Q  94 tacttaaattcaaatgaaattttacattttggagatatccttggagtggagaacaattcttctctaatatgatttattttcaaaagcattccatctgagg 193  Q
    |||||| ||||||||| || |||||||  |||||| |||||||||   ||| ||||||||||| |||| | | |  |||  ||||||||| ||| |||||    
T  503 tacttatattcaaatgtaagtttacatgctggagaaatccttggacaagaggacaattcttctataatttcactcctttctaaaagcatttcatttgagg 602  T
Q  194 agccaatagcaacgccgattctcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaa 293  Q
    ||| | ||| |||| ||||| |||| ||||||||||  || |||||||||| ||||||| |||||||| |||| | ||| |||||  | |||| ||||||    
T  603 agcgagtagtaacgtcgattgtcatatcttgtaaaaacctagcattctgcagaatatatgttgcaaatagaaggttattagccgatccttcaaagtttaa 702  T
Q  294 aatggtacatgatgtgaggtgtgacaaaacacattcatgaacagaaattgggcatttgcatttcctggacgagctgg 370  Q
    ||| ||||||||| ||||||| ||| ||||||||||| |||| ||| |||| ||||| |||| | |||| |||||||    
T  703 aattgtacatgatctgaggtgagacgaaacacattcaagaaccgaatttggccatttccattccttggatgagctgg 779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1377 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 209 - 335
Target Start/End: Original strand, 1342 - 1468
Alignment:
Q  209 cgattctcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtacatgatgt 308  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||| |||||||| |||||| ||| |||||| | |||| ||||||||| ||||| ||| |    
T  1342 cgattgtcatatcttgtaaaagcctcgcattctgcaaaatatatgttgcaaatcgaagattattggccgagccttcaaagtttaaaattgtacaggatct 1441  T
Q  309 gaggtgtgacaaaacacattcatgaac 335  Q
    |||||| ||  ||||||||||| ||||    
T  1442 gaggtgagaggaaacacattcaggaac 1468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 174 - 355
Target Start/End: Original strand, 2467488 - 2467669
Alignment:
Q  174 caaaagcattccatctgaggagccaatagcaacgccgattctcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcattt 273  Q
    ||||||| |||||| |||||||| | | | |||| ||||| |||||| ||||||||  ||| |||||||||| |||||| |||||||| |||||||||||    
T  2467488 caaaagctttccatttgaggagctagttgtaacgtcgattgtcatgttttgtaaaattctcccattctgcaatatatatgttgcaaatcgaagatcattt 2467587  T
Q  274 gccgaggcatcaaggtttaaaatggtacatgatgtgaggtgtgacaaaacacattcatgaacagaaattgggcatttgcatt 355  Q
    || ||  | ||||  |||||||| ||||||||| | ||||| ||| |||| |||||| |||| ||| |||| ||||| ||||    
T  2467588 gcagacccttcaaaatttaaaattgtacatgatataaggtgagacgaaacgcattcaagaaccgaacttggacatttccatt 2467669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 210 - 330
Target Start/End: Complemental strand, 14308647 - 14308527
Alignment:
Q  210 gattctcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtacatgatgtg 309  Q
    |||| |||||||||| ||| | || || ||||||||||||||| |||||||| ||||||||||| |  ||   | || ||||||||| ||||||||| ||    
T  14308647 gattgtcatgtcttgcaaacgtcttgcgttctgcaaaatatatgttgcaaatcgaagatcatttccatagcattgaaagtttaaaatagtacatgatctg 14308548  T
Q  310 aggtgtgacaaaacacattca 330  Q
    |||||||||||||||||||||    
T  14308547 aggtgtgacaaaacacattca 14308527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 355
Target Start/End: Original strand, 24005013 - 24005104
Alignment:
Q  264 aagatcatttgccgaggcatcaaggtttaaaatggtacatgatgtgaggtgtgacaaaacacattcatgaacagaaattgggcatttgcatt 355  Q
    |||||||||||  ||| |||||   || ||||| ||||||||| ||||||| ||  ||||||||||| |||| |||||||||||||| ||||    
T  24005013 aagatcatttgttgagccatcagaattgaaaatagtacatgatctgaggtgagaagaaacacattcaggaaccgaaattgggcatttccatt 24005104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 17392734 - 17392685
Alignment:
Q  221 cttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatca 270  Q
    |||||||||| ||||||||||||||||||||| |||| ||| ||| ||||    
T  17392734 cttgtaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatca 17392685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 20112253 - 20112217
Alignment:
Q  235 gcattctgcaaaatatattttgcaaattgaagatcat 271  Q
    |||||||||||||||||| |||||||||||| |||||    
T  20112253 gcattctgcaaaatatatgttgcaaattgaaaatcat 20112217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 500
Target Start/End: Original strand, 24005199 - 24005239
Alignment:
Q  460 ctcaacaaacctttttaatataaagaatttgaagattggga 500  Q
    |||||||||||||| ||||| ||||||||||||| ||||||    
T  24005199 ctcaacaaacctttctaataaaaagaatttgaagcttggga 24005239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 32429441 - 32429477
Alignment:
Q  233 tcgcattctgcaaaatatattttgcaaattgaagatc 269  Q
    |||||||||||||||||||| |||| |||||||||||    
T  32429441 tcgcattctgcaaaatatatgttgcgaattgaagatc 32429477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 19316472 - 19316540
Alignment:
Q  93 atacttaaattcaaatgaaattttacattttggagatatccttggagtggagaacaattcttctctaat 161  Q
    |||||||| ||||||||||| |||||||  | ||||||||||||||  |||| ||||||||||||||||    
T  19316472 atacttaagttcaaatgaaagtttacatcctcgagatatccttggataggaggacaattcttctctaat 19316540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 19316585 - 19316645
Alignment:
Q  215 tcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttgc 275  Q
    ||||||||||||||| || ||| ||||| | |||||||||||||||| ||| |||||||||    
T  19316585 tcatgtcttgtaaaatacccgcgttctggagaatatattttgcaaatcgaatatcatttgc 19316645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 270
Target Start/End: Complemental strand, 8794184 - 8794149
Alignment:
Q  235 gcattctgcaaaatatattttgcaaattgaagatca 270  Q
    |||||||||||||||||| |||||||||||||||||    
T  8794184 gcattctgcaaaatatatcttgcaaattgaagatca 8794149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University