View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10094_low_4 (Length: 257)

Name: NF10094_low_4
Description: NF10094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10094_low_4
NF10094_low_4
[»] scaffold0038 (4 HSPs)
scaffold0038 (1-249)||(42831-43079)
scaffold0038 (1-254)||(27308-27561)
scaffold0038 (1-251)||(34588-34838)
scaffold0038 (5-249)||(116661-116905)
[»] chr6 (58 HSPs)
chr6 (1-249)||(28242669-28242917)
chr6 (1-254)||(28226810-28227063)
chr6 (1-251)||(28234427-28234677)
chr6 (5-249)||(28325346-28325590)
chr6 (1-249)||(28185231-28185479)
chr6 (1-249)||(28180979-28181227)
chr6 (1-249)||(28297787-28298035)
chr6 (1-249)||(28514038-28514286)
chr6 (1-251)||(27611076-27611326)
chr6 (1-249)||(26884028-26884276)
chr6 (1-249)||(27724919-27725167)
chr6 (1-216)||(27593094-27593309)
chr6 (1-249)||(27718453-27718701)
chr6 (1-216)||(27678844-27679059)
chr6 (1-240)||(27698568-27698807)
chr6 (5-249)||(27604783-27605027)
chr6 (1-204)||(27677688-27677891)
chr6 (1-99)||(27706476-27706574)
chr6 (5-249)||(26893549-26893793)
chr6 (1-219)||(25579614-25579832)
chr6 (32-249)||(28786143-28786360)
chr6 (32-249)||(28792264-28792481)
chr6 (1-249)||(26342008-26342256)
chr6 (1-237)||(26802319-26802555)
chr6 (1-249)||(27229097-27229345)
chr6 (1-216)||(31284186-31284401)
chr6 (5-219)||(26622871-26623085)
chr6 (5-219)||(26728849-26729063)
chr6 (1-198)||(26646395-26646592)
chr6 (1-198)||(26752363-26752560)
chr6 (1-249)||(26936959-26937207)
chr6 (1-248)||(28139407-28139654)
chr6 (151-249)||(28098593-28098691)
chr6 (1-219)||(28781034-28781252)
chr6 (1-138)||(28149914-28150050)
chr6 (1-99)||(26142880-26142978)
chr6 (1-219)||(26655884-26656102)
chr6 (1-219)||(26761855-26762073)
chr6 (1-75)||(26823879-26823953)
chr6 (5-249)||(26861481-26861725)
chr6 (11-231)||(29825910-29826130)
chr6 (1-232)||(2184170-2184401)
chr6 (1-99)||(25481757-25481855)
chr6 (1-195)||(27531271-27531465)
chr6 (1-99)||(25538555-25538653)
chr6 (1-219)||(27338139-27338357)
chr6 (1-219)||(27398879-27399097)
chr6 (1-99)||(26055941-26056039)
chr6 (1-99)||(26075911-26076009)
chr6 (1-78)||(26048881-26048958)
chr6 (1-78)||(26070050-26070127)
chr6 (1-99)||(2184913-2185011)
chr6 (5-78)||(28098447-28098520)
chr6 (112-231)||(25071542-25071661)
chr6 (5-75)||(25506987-25507057)
chr6 (1-231)||(26974935-26975165)
chr6 (151-231)||(27214300-27214380)
chr6 (151-231)||(27234848-27234928)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-249)||(58356-58604)
[»] scaffold0349 (2 HSPs)
scaffold0349 (1-249)||(3495-3744)
scaffold0349 (1-240)||(14430-14668)
[»] chr2 (1 HSPs)
chr2 (1-247)||(3279555-3279801)
[»] chr4 (6 HSPs)
chr4 (8-249)||(5091035-5091276)
chr4 (1-249)||(18655538-18655786)
chr4 (1-249)||(18731565-18731813)
chr4 (1-75)||(18679628-18679702)
chr4 (1-75)||(18699461-18699535)
chr4 (1-249)||(18724146-18724394)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-249)||(4745-4993)
scaffold0277 (32-219)||(13737-13924)
[»] chr8 (2 HSPs)
chr8 (55-237)||(31903728-31903910)
chr8 (1-73)||(29273844-29273916)
[»] chr1 (3 HSPs)
chr1 (1-75)||(268418-268492)
chr1 (1-98)||(28127740-28127837)
chr1 (1-78)||(28164423-28164500)
[»] scaffold1254 (1 HSPs)
scaffold1254 (32-219)||(22-209)
[»] scaffold0419 (1 HSPs)
scaffold0419 (32-219)||(7420-7607)
[»] scaffold0781 (1 HSPs)
scaffold0781 (167-232)||(91-156)


Alignment Details
Target: scaffold0038 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 43079 - 42831
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |    
T  43079 ttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttattttg 42980  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    | |||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  42979 tcacctcctggaagttctctgtcatcaatgaaggtgcgaattcccttcttacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactac 42880  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    |||||||||||||||| || |||||||| || |||||||||| ||||||    
T  42879 ctctaaaactaaggaagacatcataggtaaacccataggagagggaaga 42831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 27561 - 27308
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||| |||||||||     
T  27561 ttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttgaaaagtgatgatgttatttca 27462  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    | ||||||| |||||||||| ||||||||||| |||||||| |||||||||||||||||  ||||||||||||| ||||||||||| ||||||||| |||    
T  27461 tcacctccttgaagctctctatcatcaaagaatgtgtgaattcccttcttacaaagatcactgtagagatttccagtaaaaccataacgagtgtcaatac 27362  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaagaagggg 254  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27361 ctctaaaactaaggaacacgtcataggtgaatccataagagaaggaagaagggg 27308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 34838 - 34588
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||     
T  34838 ttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttatttca 34739  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||||| ||||||| |||||||||| ||||||||| || ||||| | ||||||| || | ||||||||| |||||||||||||||||||||||||||    
T  34738 tctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgtgacaaagagctctatagagattttcggtaaaaccatagcgagtgtcactac 34639  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaagaag 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34638 ctctaaaactaaggaacacgtcataggtgaatccataggagaaagaagaag 34588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 116905 - 116661
Alignment:
Q  5 tccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcgtaac 104  Q
    ||||| ||||| |||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| ||    
T  116905 tccaagcaaaaggaagaagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggccttgaaaagtgacggtgttatttcgtcac 116806  T
Q  105 ctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctct 204  Q
    ||| | |||| ||| ||||||||| ||||||  |||| | |||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  116805 ctcgttgaaggtctttgtcatcaatgaaggtacgaattctcttcctacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctct 116706  T
Q  205 aaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  116705 aaaactaaggaacacgtcataggtgaatccataggaaaaggaaga 116661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 58)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 28242917 - 28242669
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |    
T  28242917 ttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttattttg 28242818  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    | |||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  28242817 tcacctcctggaagttctctgtcatcaatgaaggtgcgaattcccttcttacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactac 28242718  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    |||||||||||||||| || |||||||| || |||||||||| ||||||    
T  28242717 ctctaaaactaaggaagacatcataggtaaacccataggagagggaaga 28242669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 28227063 - 28226810
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||| |||||||||     
T  28227063 ttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttgaaaagtgatgatgttatttca 28226964  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    | ||||||| |||||||||| ||||||||||| |||||||| |||||||||||||||||  ||||||||||||| ||||||||||| ||||||||| |||    
T  28226963 tcacctccttgaagctctctatcatcaaagaatgtgtgaattcccttcttacaaagatcactgtagagatttccagtaaaaccataacgagtgtcaatac 28226864  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaagaagggg 254  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28226863 ctctaaaactaaggaacacgtcataggtgaatccataagagaaggaagaagggg 28226810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 28234677 - 28234427
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||     
T  28234677 ttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttatttca 28234578  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||||| ||||||| |||||||||| ||||||||| || ||||| | ||||||| || | ||||||||| |||||||||||||||||||||||||||    
T  28234577 tctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgtgacaaagagctctatagagattttcggtaaaaccatagcgagtgtcactac 28234478  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaagaag 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28234477 ctctaaaactaaggaacacgtcataggtgaatccataggagaaagaagaag 28234427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 28325590 - 28325346
Alignment:
Q  5 tccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcgtaac 104  Q
    ||||| ||||| |||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| ||    
T  28325590 tccaagcaaaaggaagaagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggccttgaaaagtgacggtgttatttcgtcac 28325491  T
Q  105 ctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctct 204  Q
    ||| | |||| ||| ||||||||| ||||||  |||| | |||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  28325490 ctcgttgaaggtctttgtcatcaatgaaggtacgaattctcttcctacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctct 28325391  T
Q  205 aaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  28325390 aaaactaaggaacacgtcataggtgaatccataggaaaaggaaga 28325346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 28185479 - 28185231
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| |||||||||     
T  28185479 ttcgtccaagcaaaatgaagaagaagcataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgaaaagtgatgatgttatttct 28185380  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    | ||||||| |||||||||||||||| | ||||||  | || ||||| | ||||||| || | | ||||||||| ||||||| ||| |||||||||||||    
T  28185379 tcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctattgagatttccagtaaaacgataacgagtgtcactac 28185280  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28185279 ctctaaagctaaggaacacgtcataggtgaatccataggagaaggaaga 28185231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 28181227 - 28180979
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| |||||||||     
T  28181227 ttcgtccaagcaaaatgaagaagaagcataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgaaaagtgatgatgttatttct 28181128  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    | ||||||| |||||||||||||||| | ||||||  | || ||||| | ||||||| || | | ||||||||| ||||||||||| |||||||||| ||    
T  28181127 tcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctattgagatttccagtaaaaccataacgagtgtcaccac 28181028  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  28181027 ctctaaagctaaggaacgcgtcataggtgaatccataggagaaggaaga 28180979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 28297787 - 28298035
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||||||||| |||||||||| ||||||||||  ||| |||||||||||||||||||||    
T  28297787 ttcgtccaagcaaaatgaagaagaagcataattggtagataagacaggaatgaaaatcctagtctcttcaatgtgcttgaaaagtgatggtgttatttcg 28297886  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    | |||||||  ||||||||||||||||| ||||||| |||| |||||| ||||||||||||||| |||||||||  ||||||  ||||| ||||||||||    
T  28297887 tcacctcctttaagctctctgtcatcaatgaaggtgcgaattcccttcctacaaagatctttgtggagatttccaataaaactgtagcgtgtgtcactac 28297986  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    |||||||||| ||||| |||||||  |||||||||||||||||||||||    
T  28297987 ctctaaaacttaggaaaacgtcatgagtgaatccataggagaaggaaga 28298035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 28514286 - 28514038
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||||||||| |||||||||| ||||||||||  ||| |||||||||||||||||||||    
T  28514286 ttcgtccaagcaaaatgaagaagaagcataattggtagataagacaggaatgaaaatcctagtctcttcaatgtgcttgaaaagtgatggtgttatttcg 28514187  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    | |||||||  ||||||||||||||||| ||||||| |||| |||||| ||||||||||||||| |||||||||  ||||||  ||||| ||||||||||    
T  28514186 tcacctcctttaagctctctgtcatcaatgaaggtgcgaattcccttcctacaaagatctttgtggagatttccaataaaactgtagcgtgtgtcactac 28514087  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    |||||||||| ||||| |||||||  |||||||||||||||||||||||    
T  28514086 ctctaaaacttaggaaaacgtcatgagtgaatccataggagaaggaaga 28514038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 27611076 - 27611326
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||||||||| |||||||| ||||| |||||||| || |||||||||||||||||||| || ||||||||||| |  ||||||||||| |||||     
T  27611076 ttcgtccaaacaaaacgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttca 27611175  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| |||||| ||  ||||||||| |||||| || || ||||| | |  |||| | ||||||||||||||||||||||| | |||||||||| | |    
T  27611176 tctcctcttggaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgc 27611275  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaagaag 251  Q
    | |||||||| |||||||| |  || |||||||||||||| || |||||||    
T  27611276 ccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaag 27611326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 26884276 - 26884028
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    |||||||||||||||||||||||| ||||| ||| |||| || |  ||||||||||| ||||| |||||||||||||| |  ||||||||||| ||||||    
T  26884276 ttcgtccaaacaaaatgaagaagatgcatagttggtagaaaatattggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcg 26884177  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
       |||| |||||| |   | ||||||| ||||||||| || ||||| |||  |||| | |||||||||||||| || |||||||| ||||||||||| |    
T  26884176 cttcctcttggaagatgattatcatcaatgaaggtgtggattcccttgttagtaagagccttgtagagatttccagtgaaaccataccgagtgtcacttc 26884077  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    |||| ||||| |||||||| |  || |||||||||||||| || |||||    
T  26884076 ctctgaaactgaggaacacttggtaagtgaatccataggaaaatgaaga 26884028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 27724919 - 27725167
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||||||||| |||||| | ||||| |||||||| || |||||||||||||||||||| || ||||||||||| |  ||||||||||| |||||     
T  27724919 ttcgtccaaacaaaacgaagaataggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttca 27725018  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| | |||| ||  ||||||||| |||||| || || ||||| | |  |||| | ||||||||||||||||||||||| |  ||||||||| | |    
T  27725019 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgc 27725118  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    | ||||||||||||||||| |  || |||||||||||||| || |||||    
T  27725119 ccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaaga 27725167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 27593094 - 27593309
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||||||||| |||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||     
T  27593094 ttcgtccaaacaaaacgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttca 27593193  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| | ||||  |  ||||||||| ||||||||  || ||||| | |  |||| | ||||||||||| ||||| ||||| || ||||||||||| |    
T  27593194 tttcctctttgaagaccattgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttc 27593293  T
Q  201 ctctaaaactaaggaa 216  Q
    |||| ||||| |||||    
T  27593294 ctctgaaactgaggaa 27593309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 27718453 - 27718701
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||||||||| |||||||| ||||| |||||||| || |||||||||||||||||||| || ||||||||||| |  ||||||||||| |||||     
T  27718453 ttcgtccaaacaaaacgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttca 27718552  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| | |||| ||  ||||||||| |||||| || || ||||| | |  |||| | ||||||||||||||||||||||  |  ||||||||| | |    
T  27718553 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaactgtgccgagtgtcagtgc 27718652  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    | |||||||| |||||||| |  || |||||||||| |||||| |||||    
T  27718653 ccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaaga 27718701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 27679059 - 27678844
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    |||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||     
T  27679059 ttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttca 27678960  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| | ||||  |  | | ||||| ||||||||  || ||||| | |  |||| | ||||||||||| ||||| ||||| || ||||||||||| |    
T  27678959 tctcctctttgaagaccattcttatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattcccggtgaaaccgtaccgagtgtcacttc 27678860  T
Q  201 ctctaaaactaaggaa 216  Q
    |||| ||||| |||||    
T  27678859 ctctgaaactgaggaa 27678844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27698568 - 27698807
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    |||||||||||||||||||||||| ||||| |||| ||| || |||||||||||||||||||| || ||||||||||| |  ||||||||||| |||||     
T  27698568 ttcgtccaaacaaaatgaagaagatgcatagttgagagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttca 27698667  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| | |||| ||  ||||||||| |||||| || || ||||| | |  |||| | ||||||||||||||||||||||| |  ||||||||| | |    
T  27698668 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgc 27698767  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccatagga 240  Q
    | |||||||| | |||||| |  || ||||||||||||||    
T  27698768 ccctaaaactgatgaacacttggtaagtgaatccatagga 27698807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 27604783 - 27605027
Alignment:
Q  5 tccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcgtaac 104  Q
    ||||||||||| |||||||| ||||| |||||||| || ||||||||||||||||| || || ||||||||||| | ||||| |||||| ||||| |  |    
T  27604783 tccaaacaaaaggaagaagaggcatatttgatagaaaacacaggaataaaaatcctggattcatcaatggccttgagaagtgctggtgtgatttcatctc 27604882  T
Q  105 ctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctct 204  Q
    ||| | |||| ||  | ||||||| |||||| ||||| ||||| | |  |||| | ||||||||||| ||||||||||| || ||||||||| | || ||    
T  27604883 ctcttcgaagatcattttcatcaatgaaggtatgaattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccct 27604982  T
Q  205 aaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    ||||||||||||||| |  || |||||| ||||||| || |||||    
T  27604983 aaaactaaggaacacttggtaagtgaatgcataggaaaatgaaga 27605027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 27677688 - 27677891
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    |||||||||||||||||||||||| ||||| |||||||| || |||| |||||||||||||||||||||||||||||| | |||||||||||| |||||     
T  27677688 ttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacagcaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttca 27677787  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| | |||| ||    |  |||| ||||||||| || ||||| | |  |||| | ||||||||||| ||||| ||||| || ||||||||||| |    
T  27677788 tcccctctttgaagttcatgattgtcaatgaaggtgtggattcccttgtcatcaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttc 27677887  T
Q  201 ctct 204  Q
    ||||    
T  27677888 ctct 27677891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 27706476 - 27706574
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttc 99  Q
    |||||||||||||||||||||||| |||||  ||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||    
T  27706476 ttcgtccaaacaaaatgaagaagaggcataggtgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttc 27706574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 26893549 - 26893793
Alignment:
Q  5 tccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcgtaac 104  Q
    ||||||||||||  |||||||||||| |||||||| | ||| |||||  | ||| ||||||||||||| ||||| | |||||||||||  ||||||| ||    
T  26893549 tccaaacaaaatatagaagaagcatagttgatagagaggactggaatgtatatcatagactcttcaattgccttgataagtgatggtgagatttcgtcac 26893648  T
Q  105 ctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctct 204  Q
    |||   |||||||| | ||||||| |||||||||||| ||  | | ||||||| |||| || ||||  || ||||||||| | |||||||||   |||||    
T  26893649 ctctatgaagctctgtatcatcaatgaaggtgtgaattccactatcacaaagagctttataaagatgacccgtaaaaccaaaacgagtgtcagagcctct 26893748  T
Q  205 aaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    |||| | ||||| || || |||||||||||||| ||| |||||||    
T  26893749 aaaattgaggaagacatcgtaggtgaatccatacgaggaggaaga 26893793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 25579832 - 25579614
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    |||||||||||||||||||||||| ||||| |||  ||| || |  ||||||||||||||||| |||||||||||||| | |||||||||||| |||||     
T  25579832 ttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttca 25579733  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| | |||| ||  | ||||||||||||||  |||| ||||| | |  |||| | || |||||||| |||||||||   | |||||||||||| |    
T  25579732 tctcctctttgaagatcattatcatcaaagaaggtacgaattcccttgtcaacaagagccttatagagattaccggtaaaagtgttgcgagtgtcactgc 25579633  T
Q  201 ctctaaaactaaggaacac 219  Q
    |||| ||||| ||||||||    
T  25579632 ctctgaaactgaggaacac 25579614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 249
Target Start/End: Complemental strand, 28786360 - 28786143
Alignment:
Q  32 ttgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcgtaacctcctggaagctctctgtcatcaaaga 131  Q
    |||||||| || |||||||||||||||||||| ||||| |||||||| |  ||||||||||| ||||| |  |||| | |||| ||  ||||||||| ||    
T  28786360 ttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 28786261  T
Q  132 aggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacgtcataggtgaa 231  Q
    |||| |  || ||||| | |  |||| | ||||||||||||||||||||||| | |||||||||| | || |||||||| |||||||| |  || |||||    
T  28786260 aggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaa 28786161  T
Q  232 tccataggagaaggaaga 249  Q
    ||||||||| || |||||    
T  28786160 tccataggaaaatgaaga 28786143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 249
Target Start/End: Complemental strand, 28792481 - 28792264
Alignment:
Q  32 ttgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcgtaacctcctggaagctctctgtcatcaaaga 131  Q
    |||||||| || |||||||||||||||||||| ||||| |||||||| |  ||||||||||| ||||| |  |||| | |||| ||  ||||||||| ||    
T  28792481 ttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 28792382  T
Q  132 aggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacgtcataggtgaa 231  Q
    |||| |  || ||||| | |  |||| | ||||||||||||||||||||||| | |||||||||| | || |||||||| |||||||| |  || |||||    
T  28792381 aggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaa 28792282  T
Q  232 tccataggagaaggaaga 249  Q
    ||||||||| || |||||    
T  28792281 tccataggaaaatgaaga 28792264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 26342008 - 26342256
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||||||||| |||||||||||||| ||||| || || |  ||||| |||||||| |||||||||||||| || | ||||||| |||| |||| |    
T  26342008 ttcgtccaaacaaaacgaagaagaagcatagttgattgagaaaattggaatgaaaatcctggactcttcaatggctttgacaagtgattgtgtgattttg 26342107  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    | ||||||  ||||||| || ||||||| ||||||| | |  ||    | ||| ||| || | |||| ||| || |||||||||||||||||| || | |    
T  26342108 tcacctccatgaagctccctatcatcaatgaaggtgcggactccaccgtcacatagagctctatagatattgccagtaaaaccatagcgagtgccaatgc 26342207  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    | |||||| | |||||||| ||||| ||||||||||| ||||| |||||    
T  26342208 ccctaaaattgaggaacacatcatatgtgaatccatatgagaatgaaga 26342256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 26802555 - 26802319
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||| ||||||   ||||| ||||| |||||||| || |||||||||||||| ||||| |||||||||||||| |  ||||||||||| |||||     
T  26802555 ttcgtccaagcaaaattttgaagaggcatagttgatagaaaacacaggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttca 26802456  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| | |||| ||  ||||||||| |||||| || || ||||| | |  |||| | ||||||||||| || |||||||| || ||||||||| | |    
T  26802455 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcaataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgc 26802356  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccata 237  Q
    | |||||||| |||||||| |  || |||||||||||    
T  26802355 ccctaaaactgaggaacacttggtaagtgaatccata 26802319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 27229345 - 27229097
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||| |||||||||||||||||| ||||| |||  ||| || |  ||||||||||||| ||| || ||||||||||| |  ||||||||||| ||||||    
T  27229345 ttcgttcaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatccgagattcgtcaatggccttgacgagtgatggtgtgatttcg 27229246  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| | |||| ||  ||||||||| |||||| || || ||||| | |  |||| | ||||||||||| ||||||||||| |  ||||||||| | |    
T  27229245 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtgccgagtgtcagtgc 27229146  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    | ||||||||||||||||| |  || ||||||||| |||| || |||||    
T  27229145 ccctaaaactaaggaacacttggtaagtgaatccaaaggaaaatgaaga 27229097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 31284401 - 31284186
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||||||||| || ||||| ||||| |||  ||| || || || |||||||||||||||||||||||||| ||    ||||||||||| |||||     
T  31284401 ttcgtccaaacaaaacgacgaagaggcatagttggcagaaaacacggggataaaaatcctagactcttcaatggcattgtcgagtgatggtgtgatttca 31284302  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| | |||| || || ||||||| ||||||||| || ||||| | |  |||| | ||||||||||| ||||| |||||||| ||||||||||| |    
T  31284301 tcccctctttgaagttcactatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagattgccggtgaaaccataccgagtgtcacttc 31284202  T
Q  201 ctctaaaactaaggaa 216  Q
    | || |||||||||||    
T  31284201 ccctgaaactaaggaa 31284186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 26623085 - 26622871
Alignment:
Q  5 tccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcgtaac 104  Q
    |||||||||||||||||| | ||||| |||  ||| || |||||||||||||||||||||||||| || || ||   |||||||||| | |||||||  |    
T  26623085 tccaaacaaaatgaagaatatgcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcattgtcaagtgatggtttgatttcgtccc 26622986  T
Q  105 ctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctct 204  Q
    ||| | |||| || |  ||||||| ||||||||| || ||||| | |  |||| | |||||||||||||| || ||||| || ||||||||||| |||||    
T  26622985 ctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctct 26622886  T
Q  205 aaaactaaggaacac 219  Q
     ||||| ||||||||    
T  26622885 gaaacttaggaacac 26622871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 26729063 - 26728849
Alignment:
Q  5 tccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcgtaac 104  Q
    |||||||||||||||||| | ||||| |||  ||| || |||||||||||||||||||||||||| || || ||   |||||||||| | |||||||  |    
T  26729063 tccaaacaaaatgaagaatatgcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcattgtcaagtgatggtttgatttcgtccc 26728964  T
Q  105 ctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctct 204  Q
    ||| | |||| || |  ||||||| ||||||||| || ||||| | |  |||| | |||||||||||||| || ||||| || ||||||||||| |||||    
T  26728963 ctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctct 26728864  T
Q  205 aaaactaaggaacac 219  Q
     ||||| ||||||||    
T  26728863 gaaacttaggaacac 26728849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 26646592 - 26646395
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||||||||||  |||||| ||||| |||||||| || |||||||||||||||||||| |||||||||||||| |  ||||||||||| |||||     
T  26646592 ttcgtccaaacaaaatttagaagaggcatagttgatagaaaacacaggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttca 26646493  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcact 198  Q
    |  ||||    ||| || |  ||||||| |||||||||||| ||||| | |  |||| | |||||||||| ||| |||||||| |  |||||||||||    
T  26646492 tctcctctcttaagatcacaatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcact 26646395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 26752560 - 26752363
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||||||||||  |||||| ||||| |||||||| || |||||||||||||||||||| |||||||||||||| |  ||||||||||| |||||     
T  26752560 ttcgtccaaacaaaatttagaagaggcatagttgatagaaaacacaggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttca 26752461  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcact 198  Q
    |  ||||    ||| || |  ||||||| |||||||||||| ||||| | |  |||| | |||||||||| ||| |||||||| |  |||||||||||    
T  26752460 tctcctctcttaagatcacaatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcact 26752363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 26937207 - 26936959
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    |||||||||||||||||||||||  ||||| |||||||| || ||||| ||   |||||  || |||||||| ||||| | |||||||||||| |||||     
T  26937207 ttcgtccaaacaaaatgaagaagtggcatagttgatagagaatacaggtatggcaatcccggaatcttcaattgccttgacaagtgatggtgtgatttct 26937108  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||||  | |||||  ||||||||| ||||||| |||| ||    | ||||||| ||||||| ||||  ||  |||||    ||||||||||  | |    
T  26937107 tctcctccatggagctccttgtcatcaatgaaggtgcgaattccacaatcacaaagagctttgtaaagatgaccaataaaatggaagcgagtgtcggtgc 26937008  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    |||| ||||| |||||||||||||||||||||||||| |||||||||||    
T  26937007 ctctgaaactgaggaacacgtcataggtgaatccataagagaaggaaga 26936959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 28139654 - 28139407
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||| ||||| |||||||| ||||| ||||| || || ||||| || ||||||||||| ||||||||||| || |  ||||| |||| |||||||    
T  28139654 ttcgtccaagcaaaacgaagaagaggcatagttgatggaaaacacagggatgaaaatcctagattcttcaatggcttttacgagtgacggtgatatttcg 28139555  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    | ||||||| ||||||| || |||||||  || ||||| || ||    | || |||| |||||||||||||||| || |||||  | ||||||||||| |    
T  28139554 tcacctccttgaagctccctatcatcaataaaagtgtggattccacagtcacgaagagctttgtagagatttccagtgaaaccgaaacgagtgtcactgc 28139455  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaag 248  Q
    |||| || || || || || || || ||||| ||||||||||| ||||    
T  28139454 ctctgaagctgagaaagacatcgtatgtgaagccataggagaaagaag 28139407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 28098593 - 28098691
Alignment:
Q  151 acaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    ||||||| |||||||||||||||| ||||||||||| ||||||||  | || |||||| |||| ||||||||||||||||||||||| ||||| |||||    
T  28098593 acaaagagctttgtagagatttccagtaaaaccataccgagtgtcggtgcccctaaaattaagaaacacgtcataggtgaatccataagagaatgaaga 28098691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 28781252 - 28781034
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||| ||||||   ||||  ||||| |||||||| || |||||||||||||||||||| ||||| |||||||| |  ||||||||||| |||||     
T  28781252 ttcgtccaagcaaaattttgaagtggcatagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttca 28781153  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| | |||| ||  ||||||||| |||||| |  || ||||| | |  |||| | ||||||||||| ||||||||||| | |||||||||| | |    
T  28781152 tctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgc 28781053  T
Q  201 ctctaaaactaaggaacac 219  Q
    | |||||||| ||||||||    
T  28781052 ccctaaaactgaggaacac 28781034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 28150050 - 28149914
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    |||||||||||||||||||||||||| ||| |||||||| ||||  ||||| |||||||| |||||||||||||||||  | ||||||||||| ||||||    
T  28150050 ttcgtccaaacaaaatgaagaagaagtatagttgatagagaagattggaatgaaaatcctggactcttcaatggcctt-gagagtgatggtgtgatttcg 28149952  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtg 138  Q
    |  |||| |  ||||||  | ||||||| |||||||||    
T  28149951 tcccctcgttaaagctccgtatcatcaatgaaggtgtg 28149914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 26142978 - 26142880
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttc 99  Q
    |||||||||||||||||||||||| ||||| |||  ||| || |  ||||||||||||||||| |||||||||||||| | |||||||||||| |||||    
T  26142978 ttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttc 26142880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 26656102 - 26655884
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    |||||||||||||||||||||||| ||||| |||  ||| || |  |||||||||||||| || ||||||||||||||||  ||||||||||| |||||     
T  26656102 ttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggccttaacgagtgatggtgtgatttca 26656003  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  ||||   |||| ||  ||||||||| ||| || || || ||||| | |  |||| | ||||||||||| ||||||||||| |  || |||||| | |    
T  26656002 tctcctctgagaagatcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgc 26655903  T
Q  201 ctctaaaactaaggaacac 219  Q
    | |||||||| ||||||||    
T  26655902 ccctaaaactgaggaacac 26655884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 26762073 - 26761855
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    |||||||||||||||||||||||| ||||| |||  ||| || |  |||||||||||||| || ||||||||||||||||  ||||||||||| |||||     
T  26762073 ttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggccttaacgagtgatggtgtgatttca 26761974  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  ||||   |||| ||  ||||||||| ||| || || || ||||| | |  |||| | ||||||||||| ||||||||||| |  || |||||| | |    
T  26761973 tctcctctgagaagatcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgc 26761874  T
Q  201 ctctaaaactaaggaacac 219  Q
    | |||||||| ||||||||    
T  26761873 ccctaaaactgaggaacac 26761855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26823953 - 26823879
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggc 75  Q
    |||||||||||||||||||||||| ||||| |||  ||| || ||||||||||||||||||||||||||||||||    
T  26823953 ttcgtccaaacaaaatgaagaagaggcatagttggcagaaaacacaggaataaaaatcctagactcttcaatggc 26823879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 26861725 - 26861481
Alignment:
Q  5 tccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcgtaac 104  Q
    |||||||||||||| ||||| ||||| |||  ||| || |||||||| ||||| ||||||||||||||||| ||    ||||||  | | ||||| |  |    
T  26861725 tccaaacaaaatgacgaagaggcatagttggcagaaaacacaggaatgaaaattctagactcttcaatggcattgtcgagtgatcttttgatttcatccc 26861626  T
Q  105 ctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctct 204  Q
    ||| | |||| || |  ||||| | |||||||||||| ||||| | |  |||| | ||||||||||| |||||||||||||| ||||||||||| |||||    
T  26861625 ctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattaccggtaaaaccataccgagtgtcacttcctct 26861526  T
Q  205 aaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
     ||||| ||||| || |  ||  ||||||||||||| | ||||||    
T  26861525 gaaactgaggaatacctggtatttgaatccataggaaatggaaga 26861481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 29826130 - 29825910
Alignment:
Q  11 caaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcgtaacctcctg 110  Q
    ||||| |||||||||||||||||| |||| || | ||||||    |||||||| |||| ||| ||||| | |||||| ||||| |||||||  |||| |     
T  29826130 caaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaattgccttcacaagtgagggtgtgatttcgtcccctcttt 29826031  T
Q  111 gaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctctaaaact 210  Q
    |||||||| ||||||||| ||||||| ||||   ||| | |   ||| ||||||||||||| |||||||||||| ||||||| ||   |||| | |||||    
T  29826030 gaagctctttgtcatcaatgaaggtgcgaattttcttgtcagttagagctttgtagagattgccggtaaaaccaaagcgagtatctgcacctgtgaaact 29825931  T
Q  211 aaggaacacgtcataggtgaa 231  Q
     ||||| || |||||||||||    
T  29825930 gaggaagacatcataggtgaa 29825910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2184401 - 2184170
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    |||||||||||||||||||||||||||||| ||  | || || ||||| || ||||| || |||||||||||||| || | |||||||| |||||||||     
T  2184401 ttcgtccaaacaaaatgaagaagaagcatagttctttgagaaaacagggatgaaaattctggactcttcaatggctttcataagtgatgctgttatttca 2184302  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
       |||| | |||||||   ||||||   ||| ||||| |  ||  | ||||| ||| | | ||| ||||| ||||||||||||| ||||||||||   |    
T  2184301 ccccctcgttgaagctcctcgtcatccttgaaagtgtggactccacttttacatagagcatcgtaaagattgccggtaaaaccatggcgagtgtcagctc 2184202  T
Q  201 ctctaaaactaaggaacacgtcataggtgaat 232  Q
    |||| ||||| |||||||||| ||||||||||    
T  2184201 ctctgaaacttaggaacacgttataggtgaat 2184170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 25481855 - 25481757
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttc 99  Q
    |||||||||||||||||||||||| ||||| |||  ||| || |  |||||| |||||||||| |||||||||||||| | |||||||||||| |||||    
T  25481855 ttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaatacaaatcctagattcttcaatggccttgacaagtgatggtgtgatttc 25481757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 27531271 - 27531465
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    |||||||||||||||||||||||| ||||| ||   ||| || || ||||||||||||||||| | ||||||||| ||    ||||||||||| |||||     
T  27531271 ttcgtccaaacaaaatgaagaagatgcatagttttcagaaaatacgggaataaaaatcctagatttttcaatggcattttttagtgatggtgtgatttca 27531370  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtc 195  Q
    |  |||| | |||| ||  ||||||||| |||||| |  || ||||| | |  |||| | ||||||||||||||||||||||| | |||||||||    
T  27531371 tctcctctttgaagatcattgtcatcaatgaaggtatagattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtc 27531465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 25538653 - 25538555
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttc 99  Q
    |||||||||||||||||||||||| ||||| |||  ||| || |  ||||||||||| ||||| ||||| |||||||| | |||||||||||| |||||    
T  25538653 ttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaattctagattcttcgatggccttgacaagtgatggtgtgatttc 25538555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 27338139 - 27338357
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||| |||||||||||||| ||||| ||   ||| || |  ||||| |||||||||||||||||||||||||| | ||||||||||||  ||||     
T  27338139 ttcgtccaagcaaaatgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgctttca 27338238  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| |  ||| ||  ||||||||| |||||| |  || ||||| | |  |||| | ||||||||||| ||||||||||| ||  |||||||| |      
T  27338239 tctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgt 27338338  T
Q  201 ctctaaaactaaggaacac 219  Q
    | |||||||| ||||||||    
T  27338339 ccctaaaactgaggaacac 27338357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 27398879 - 27399097
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||| |||||||||||||| ||||| ||   ||| || |  ||||| |||||||||||||||||||||||||| | ||||||||||||  ||||     
T  27398879 ttcgtccaagcaaaatgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgctttca 27398978  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| |  ||| ||  ||||||||| |||||| |  || ||||| | |  |||| | ||||||||||| ||||||||||| ||  |||||||| |      
T  27398979 tctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgt 27399078  T
Q  201 ctctaaaactaaggaacac 219  Q
    | |||||||| ||||||||    
T  27399079 ccctaaaactgaggaacac 27399097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 26056039 - 26055941
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttc 99  Q
    |||||||||||||||||||||||| ||||| |||  ||| || |  ||||||||||||| ||| ||||| |||||||| | |||||||| ||| |||||    
T  26056039 ttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagtgatgatgtgatttc 26055941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 26076009 - 26075911
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttc 99  Q
    |||||||||||||||||||||||| ||||| |||  ||| || |  ||||||||||||| ||| ||||| |||||||| | |||||||| ||| |||||    
T  26076009 ttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagtgatgatgtgatttc 26075911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26048958 - 26048881
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggcctt 78  Q
    |||||||||||||||||||||||| ||||| |||  ||| || |  ||||||||||||||||| ||||| ||||||||    
T  26048958 ttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggcctt 26048881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26070127 - 26070050
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggcctt 78  Q
    |||||||||||||||||||||||| ||||| |||  ||| || |  ||||||||||||||||| ||||| ||||||||    
T  26070127 ttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggcctt 26070050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 2185011 - 2184913
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttc 99  Q
    |||||||||||||||||||||||||||||| |   | || || ||||| || ||||| || || ||||||||||| || | ||| ||||||||||||||    
T  2185011 ttcgtccaaacaaaatgaagaagaagcatagtcctttgagaaaacagggatgaaaattctggattcttcaatggctttcacaagcgatggtgttatttc 2184913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 28098447 - 28098520
Alignment:
Q  5 tccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggcctt 78  Q
    |||||||||||  ||||||||||||| ||  |||| ||||| ||||| |||||||| |||||||| ||||||||    
T  28098447 tccaaacaaaacaaagaagaagcatagttcttagagaagaccggaattaaaatcctggactcttcgatggcctt 28098520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 231
Target Start/End: Complemental strand, 25071661 - 25071542
Alignment:
Q  112 aagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctctaaaacta 211  Q
    ||||||| |||||||||  |||||||| || || || | | ||||| |||| || ||||| |||||||||||  | ||||||||  |||| || ||||||    
T  25071661 aagctctttgtcatcaataaaggtgtggattcctttgtcagaaagagctttataaagattaccggtaaaaccgaatcgagtgtcggtacccctgaaacta 25071562  T
Q  212 aggaacacgtcataggtgaa 231  Q
    | ||||||||||||| ||||    
T  25071561 atgaacacgtcatagatgaa 25071542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 25506987 - 25507057
Alignment:
Q  5 tccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggc 75  Q
    ||||||||||||   ||||| ||||| |||||||| |  || ||||||||||||||||| |||||||||||    
T  25506987 tccaaacaaaattttgaagaggcatagttgatagaaagaaccggaataaaaatcctagattcttcaatggc 25507057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 26975165 - 26974935
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    |||||||||||||||||||||||||||||| |   |||| |||||   |||   |||||| || |||||||||  ||| |  || || ||||| ||||||    
T  26975165 ttcgtccaaacaaaatgaagaagaagcatagtctttagagaagacgataatggtaatcctcgagtcttcaatgctcttgaggagcgaaggtgtgatttcg 26975066  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||  |  ||||||  ||||||||| |||| |||  || || || | | ||||| |||| ||||| || ||||| |||||  | ||||||||  |||    
T  26975065 tccccttttttaagctccttgtcatcaatgaagatgttgattcctttgtcagaaagagctttatagaggttaccggtgaaaccgaatcgagtgtcggtac 26974966  T
Q  201 ctctaaaactaaggaacacgtcataggtgaa 231  Q
    |||| ||||||| ||||||||||||||||||    
T  26974965 ctctgaaactaatgaacacgtcataggtgaa 26974935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 27214380 - 27214300
Alignment:
Q  151 acaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacgtcataggtgaa 231  Q
    ||||||| |||| |||||||| ||||| ||||| |  ||||||||  |||| || ||||||| ||||||||||||| ||||    
T  27214380 acaaagagctttatagagattaccggtgaaaccgtgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaa 27214300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 27234848 - 27234928
Alignment:
Q  151 acaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacgtcataggtgaa 231  Q
    ||||||| |||| |||||||| ||||| ||||| |  ||||||||  |||| || ||||||| ||||||||||||| ||||    
T  27234848 acaaagagctttatagagattaccggtgaaaccgtgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaa 27234928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 58356 - 58604
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||| ||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||    
T  58356 ttcgttcaagcaaaatgaagaagaagcatagttgatagacaagacgggaatgaaaatcctagactctttaatggccttgaaaagtgatggtgttatttcg 58455  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    | ||||||| |||||||||||||||| | ||||||  | || ||||| | ||||||| || ||||||||||||| |||||||||||||||||||||| ||    
T  58456 tcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctgtagagatttccagtaaaaccatagcgagtgtcacaac 58555  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  58556 ctctaaagctaaggaacacgtgataggtgaatccataggagaaggaaga 58604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 3495 - 3744
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataa-ttgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttc 99  Q
    |||||||||||||||||||||||| |||||  |||||||| || |||||||||||||||||||| || ||||||||||| |  ||||||||||| |||||    
T  3495 ttcgtccaaacaaaatgaagaagaggcataggttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttc 3594  T
Q  100 gtaacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcacta 199  Q
     |  |||| | |||| ||  ||||||||| |||||| || || ||||| | |  |||| | ||||||||||||||||||||||| |  ||||||||| |     
T  3595 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtg 3694  T
Q  200 cctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    || ||||||||||||||||| |  || |||||||||||||| || |||||    
T  3695 cccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaaga 3744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 14430 - 14668
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||||||||| |||||| | ||||| |||||||| || |||||||||||||||||||| || ||||||||||| |  ||||||||||| |||||     
T  14430 ttcgtccaaacaaaacgaagaa-aggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttca 14528  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| | |||| ||  ||||||||| |||||| || || ||||| | |  |||| | ||||||||||||||||||||||| |  ||||||||| | |    
T  14529 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgc 14628  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccatagga 240  Q
    | |||||||| | |||||| |  || ||||||||||||||    
T  14629 ccctaaaactgatgaacacttggtaagtgaatccatagga 14668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 3279801 - 3279555
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||||||||||  |||||||||||| |||||||| ||||| |||||||||||| | |||||||| |||||||| | ||||||| |||| |||||     
T  3279801 ttcgtccaaacaaaatatagaagaagcatagttgatagagaagaccggaataaaaatcatggactcttcgatggccttgacaagtgattgtgtgatttca 3279702  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtg-tgaatgc-ccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcact 198  Q
    | ||||||  ||||||| || ||||||| |||||||  |||| | || ||  ||  | | || | ||||||||||| ||||||||||||||||||||| |    
T  3279701 tcacctccatgaagctccctatcatcaatgaaggtgcagaatccaccgtc--acttaaagctctatagagatttccagtaaaaccatagcgagtgtcagt 3279604  T
Q  199 acctctaaaactaaggaacacgtcataggtgaatccataggagaaggaa 247  Q
     || |||||||| | ||| |||||||||||||||||||| |||||||||    
T  3279603 gcccctaaaactcaagaatacgtcataggtgaatccataagagaaggaa 3279555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 5091035 - 5091276
Alignment:
Q  8 aaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcgtaacctc 107  Q
    |||||||| |||||||||||||| | | |||| || ||   ||| | |||| |||| |||| ||||||||| | |||||| |||||||||| ||  ||||    
T  5091035 aaacaaaacgaagaagaagcatagtggttagagaaaacgataatgacaatcttagattcttgaatggccttgagaagtgacggtgttatttggtctcctc 5091134  T
Q  108 ctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctctaaa 207  Q
       |||||||||||||||||| |||||||||||| |||||   ||  ||| |||  ||||||||||| |||||||| || ||||||||  | ||||||||    
T  5091135 gctgaagctctctgtcatcaatgaaggtgtgaattcccttgacacgtagagcttcatagagatttccagtaaaaccgtaacgagtgtcggtgcctctaaa 5091234  T
Q  208 actaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    |||||| || ||||| ||||| ||||| |||||||| |||||    
T  5091235 actaagaaagacgtcgtaggtaaatccgtaggagaaagaaga 5091276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 18655538 - 18655786
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    |||||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||||| |||||| ||    ||||||||| | |||||     
T  18655538 ttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaagatcctagactcttgaatggcattgtcgagtgatggtttgatttca 18655637  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  || | | | ||||| | |||||||| ||||||||| || ||||| | |  |||| ||||||||||||  || |||||||| |  ||||||||||| |    
T  18655638 tccccactttgcagctcacggtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatgcccagtaaaaccgttacgagtgtcactgc 18655737  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    | || || || |||||||| |  || ||||||| |||||| || |||||    
T  18655738 ccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaaga 18655786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 18731565 - 18731813
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    |||||||||||||||||||||||| ||||| |||||||| || |||||||| || |||||||||||||||||||| ||    ||||||||| | |||||     
T  18731565 ttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttca 18731664  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| | | || || | |||||||| ||||||||| || ||||| | |  |||| || |||||||||  || |||||||| |  ||||||||||| |    
T  18731665 tcccctctttgcaggtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagctctgtagagatggccagtaaaaccgtcacgagtgtcactgc 18731764  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    | || || || |||||||| |  || ||||||| |||||| || |||||    
T  18731765 ccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaaga 18731813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 18679628 - 18679702
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggc 75  Q
    |||||||||||||||||||||||| ||||| |||||||| || |||||||| || ||||||||||||||||||||    
T  18679628 ttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggc 18679702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 18699461 - 18699535
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggc 75  Q
    |||||||||||||||||||||||| ||||| |||||||| || |||||||| || ||||||||||||||||||||    
T  18699461 ttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggc 18699535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 18724146 - 18724394
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||| |||||||||||||||||| ||||| |||||||| || |||||||| || |||||||||||||||||||| ||    ||||||||| | |||||     
T  18724146 ttcgttcaaacaaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttca 18724245  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| | | || || | |||||||| ||||||||| || ||||| | |  |||| | ||||||||||  || |||||||| |  ||||||||||| |    
T  18724246 tcccctctttgcaggtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgc 18724345  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    | || || || |||||||| |  || ||||||| |||||| || |||||    
T  18724346 ccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaaga 18724394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 4745 - 4993
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcg 100  Q
    ||||||||||||||| |||||| | |||||   |||||| || |||||||||||||||||||| || |||||||||||    || |||||||| |||||     
T  4745 ttcgtccaaacaaaacgaagaaaaggcatagaagatagaaaacacaggaataaaaatcctagattcatcaatggccttgcggagggatggtgtgatttca 4844  T
Q  101 taacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactac 200  Q
    |  |||| | |||| ||  ||||||||| |||||| |  || ||||| | |  |||| | ||||||||||||||||||||||| | |||||||||| | |    
T  4845 tctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcaatgc 4944  T
Q  201 ctctaaaactaaggaacacgtcataggtgaatccataggagaaggaaga 249  Q
    | |||||||| |||||||| |  || |||||||||||||| || |||||    
T  4945 ccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaaga 4993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 13737 - 13924
Alignment:
Q  32 ttgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcgtaacctcctggaagctctctgtcatcaaaga 131  Q
    |||||||| || |||||||||||||||||||| ||||| |||||||| |  ||||||||||| ||||| |  |||| | |||| ||  ||||||||| ||    
T  13737 ttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 13836  T
Q  132 aggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctctaaaactaaggaacac 219  Q
    |||| |  || ||||| | |  |||| | ||||||||||| ||||||||||| | |||||||||| | || |||||||| ||||||||    
T  13837 aggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 13924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 237
Target Start/End: Complemental strand, 31903910 - 31903728
Alignment:
Q  55 aatcctagactcttcaatggccttaaaaagtgatggtgttatttcgtaacctcctggaagctctctgtcatcaaagaaggtgtgaatgcccttcttacaa 154  Q
    |||||||||||||||||| ||||  |||||||||||||| ||||| |  |||| | |||| |||   || ||||  |||||||| || ||||| | | ||    
T  31903910 aatcctagactcttcaattgcctctaaaagtgatggtgtgatttcatgtcctctttgaagttcttcatcgtcaataaaggtgtggattcccttatcataa 31903811  T
Q  155 agatctttgtagagatttccggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccata 237  Q
    ||| |||||||||||||||| ||||||||||||||||||||    |||||||| || |||||||| || ||||||||||||||    
T  31903810 agagctttgtagagatttccagtaaaaccatagcgagtgtctaagcctctaaagctgaggaacacatcgtaggtgaatccata 31903728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29273844 - 29273916
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatg 73  Q
    |||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| |||||||||||||||    
T  29273844 ttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaaaattctagactcttcaatg 29273916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 268418 - 268492
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggc 75  Q
    |||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||    
T  268418 ttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggc 268492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28127740 - 28127837
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttattt 98  Q
    |||||||||||||||||||||||| ||||| ||| |||| || |||||||||||||| ||||| |||||||||||||| |||||||| ||||| ||||    
T  28127740 ttcgtccaaacaaaatgaagaagaggcatagttggtagaaaatacaggaataaaaattctagattcttcaatggcctttaaaagtgacggtgtgattt 28127837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 28164423 - 28164500
Alignment:
Q  1 ttcgtccaaacaaaatgaagaagaagcataattgatagacaagacaggaataaaaatcctagactcttcaatggcctt 78  Q
    |||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| | ||| | ||||||||||||    
T  28164423 ttcgtccaaacaaaatgaagaagaggcatagttgatagataacacaggaataaaaattcaagatttttcaatggcctt 28164500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 22 - 209
Alignment:
Q  32 ttgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcgtaacctcctggaagctctctgtcatcaaaga 131  Q
    |||||||| || |||||||||||||||||||| ||||| |||||||| |  ||||||||||| ||||| |  |||| | |||| ||  ||||||||| ||    
T  22 ttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 121  T
Q  132 aggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctctaaaactaaggaacac 219  Q
    |||| |  || ||||| | |  |||| | ||||||||||| ||||||||||| | |||||||||| | || |||||||||||||||||    
T  122 aggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacac 209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 219
Target Start/End: Complemental strand, 7607 - 7420
Alignment:
Q  32 ttgatagacaagacaggaataaaaatcctagactcttcaatggccttaaaaagtgatggtgttatttcgtaacctcctggaagctctctgtcatcaaaga 131  Q
    |||||||| || |||||||||||||||||||| ||||| |||||||| |  ||||||||||| ||||| |  |||| | |||| ||  ||||||||| ||    
T  7607 ttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 7508  T
Q  132 aggtgtgaatgcccttcttacaaagatctttgtagagatttccggtaaaaccatagcgagtgtcactacctctaaaactaaggaacac 219  Q
    |||| |  || ||||| | |  |||| | ||||||||||| ||||||||||| | |||||||||| | || |||||||||||||||||    
T  7507 aggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacac 7420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 91 - 156
Alignment:
Q  167 agatttccggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacgtcataggtgaat 232  Q
    ||||| ||||||||||||| ||||||||||   ||||| ||||| |||||||||| ||||||||||    
T  91 agattgccggtaaaaccatggcgagtgtcagctcctctgaaacttaggaacacgttataggtgaat 156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University