View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10095_low_11 (Length: 207)
Name: NF10095_low_11
Description: NF10095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10095_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 27 - 177
Target Start/End: Original strand, 5331120 - 5331270
Alignment:
| Q |
27 |
aaaagaggacattacattacatacattggccactttatagtatgcgaaataacaaataatcttgatgttgatgacgttggtttgagatcttgaaatgtgt |
126 |
Q |
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| T |
5331120 |
aaaacaggacattacattacatacattggccactttataggatgcgaaataacaaataattttgatgttgatgacgttggtttgagatcttgaagtgtat |
5331219 |
T |
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| Q |
127 |
tattctcaagtctcaaattcatgccaaattaggtgagataatttaacattt |
177 |
Q |
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| T |
5331220 |
tattcttaagtctcaaattcgtgccaagttaggtgagatagtttaacattt |
5331270 |
T |
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Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 27 - 177
Target Start/End: Original strand, 5348839 - 5348989
Alignment:
| Q |
27 |
aaaagaggacattacattacatacattggccactttatagtatgcgaaataacaaataatcttgatgttgatgacgttggtttgagatcttgaaatgtgt |
126 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | |
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| T |
5348839 |
aaaacaggacattacattacatacattggccactttataggatgcgaaataacaaataattttgatgttgatgacgttggtttgagatcttgaagtgtat |
5348938 |
T |
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| Q |
127 |
tattctcaagtctcaaattcatgccaaattaggtgagataatttaacattt |
177 |
Q |
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|||||| ||||||||||||| |||||| |||||||||||| |||||||||| |
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| T |
5348939 |
tattcttaagtctcaaattcgtgccaagttaggtgagatagtttaacattt |
5348989 |
T |
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