View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10095_low_2 (Length: 312)
Name: NF10095_low_2
Description: NF10095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10095_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 10050157 - 10049856
Alignment:
| Q |
1 |
accaatgcgcatccaatctgatagaacatattataaaatagttgcaacatcaaaaactttacaagtctactagtgctaaagctgcacataatgcatgtaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10050157 |
accaatgcgcatccaatctgatagaacatattataaaatagttacaacatcaaaaactttacaagtctactagtgctaaagctgcacataatgcatgtaa |
10050058 |
T |
|
| Q |
101 |
cacaatatgtgaaatatacattgtataagaatgaatcagtcaatggttggataaattttaggtatctatatcgcgaattcgcatcatagctaagcaataa |
200 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| |
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| T |
10050057 |
cacattatgtgaaatatatattgtataagaatgaatcagtcaatggttggataaattctaggtatctaaatcgcgaatttgcatcatagctaagcaataa |
10049958 |
T |
|
| Q |
201 |
aaaagaagaaattacatttatata-------gaattttgcataagcaataaggtttaccatgtacatatataattgtcagatctagatttagggcattca |
293 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10049957 |
aaaacaagaaattacatttatatagaatatagaattttgcataagcaataaggtttaccatgtacatatataattgtcagatctatatttagggcattca |
10049858 |
T |
|
| Q |
294 |
at |
295 |
Q |
| |
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|| |
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|
| T |
10049857 |
at |
10049856 |
T |
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