View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10095_low_4 (Length: 269)
Name: NF10095_low_4
Description: NF10095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10095_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 55939917 - 55940169
Alignment:
| Q |
1 |
aagtgctagcaatcttaacatagaactggatgataatggatatggtacatgtggtaaaacttgattggtaagtcaggaaaatacctaaagaatgagaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
55939917 |
aagtgctagcaatcttaacatagaactggatgataatggatatggtacatgtggtaaaacttgattagtaagtcaggaaaatacctaaagaatgagaaga |
55940016 |
T |
|
| Q |
101 |
tatatattgctggatgtggctaaatgaaattcgaataaatatgtagaagtcaagaacagatcttttcgaacaagtatagtaaacccaggtttacaaaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55940017 |
tatatattgctggatgtggctaaatgaaattcgaataaatatgtagaagtcaagaacagatcttttcgaacaagtatagtaaacccaggtttacaaaatt |
55940116 |
T |
|
| Q |
201 |
ataacaactaaagggtggttttatagggtgaggaagtgtctcatatagttaag |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55940117 |
ataacaactaaagggtggttttatagggtgaggaagtgtctcatatagttaag |
55940169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University