View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10095_low_6 (Length: 250)
Name: NF10095_low_6
Description: NF10095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10095_low_6 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 33952543 - 33952307
Alignment:
| Q |
1 |
aatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33952543 |
aatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtctt |
33952444 |
T |
|
| Q |
101 |
cgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaatcagtattaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33952443 |
cgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaatcagtattaga |
33952344 |
T |
|
| Q |
201 |
atcaagaatagaatgaccttgtgatagttctttccct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
33952343 |
atcaagaatagaatgaccttgtgatagttctttccct |
33952307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 33959843 - 33959607
Alignment:
| Q |
1 |
aatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33959843 |
aatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtctt |
33959744 |
T |
|
| Q |
101 |
cgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaatcagtattaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| ||||||| | |||||||| |
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|
| T |
33959743 |
cgggaaataaggctatgtccatgaagcactccatgattgtaggattatcttccaaaacatcaaagatcttttggaggcgaataagtaatttggtattaga |
33959644 |
T |
|
| Q |
201 |
atcaagaatagaatgaccttgtgatagttctttccct |
237 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
33959643 |
atcaagaagagaatgaccttgtgctagttctttccct |
33959607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 33975143 - 33974914
Alignment:
| Q |
1 |
aatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33975143 |
aatttgttgatgatttccattgcttgtattccgttgtcatctagtttatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtctt |
33975044 |
T |
|
| Q |
101 |
cgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaatcagtattaga |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
33975043 |
cgggaaataaggctaggtccatgaagcactccatgatttttggattatcttccaaaacatcgaagatcttttggaggcgagtaagtaattcggtattaga |
33974944 |
T |
|
| Q |
201 |
atcaagaatagaatgaccttgtgatagttc |
230 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
33974943 |
atcaagaattgaatgaccttgtgatagttc |
33974914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33992063 - 33991840
Alignment:
| Q |
1 |
aatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992063 |
aatttgttgatgatttccattgcttgtattccgttgtcatctagtttatacagctttgcccacatatcaacgagagcagcgacaggaattctatggtctt |
33991964 |
T |
|
| Q |
101 |
cgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaatcagtattaga |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||| |
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|
| T |
33991963 |
caggaaataaggctatgtccatgaagcactccatgattgtaggattatcttccaaaacatcaaagatcttttggaggcgagtaagtaattcggtattaga |
33991864 |
T |
|
| Q |
201 |
atcaagaatagaatgaccttgtga |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33991863 |
atcaagaatagaatgaccttgtga |
33991840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 33941949 - 33941720
Alignment:
| Q |
1 |
aatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtctt |
100 |
Q |
| |
|
||||||||||| || |||||||||| | | |||| |||||||||| ||||| ||||||||||||||||| | ||||| ||||||||||| || |||| |
|
|
| T |
33941949 |
aatttgttgattatgtccattgcttctttgccgtcatcatctagtccatacaactctgcccacatatcaatcaaggcagcaacaggaattctctgatctt |
33941850 |
T |
|
| Q |
101 |
cgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaatcagtattaga |
200 |
Q |
| |
|
| |||||||| || | ||||||||||||||| || | ||| ||||||||| |||||||| || ||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
33941849 |
caggaaataatgcaaggtccatgaagcactctttgctaatggcattatcttccaaaacatccaaaatcttttggaggcgaataagtaattcagtattaga |
33941750 |
T |
|
| Q |
201 |
atcaagaatagaatgaccttgtgatagttc |
230 |
Q |
| |
|
|||||| |||||| ||||| |||| ||||| |
|
|
| T |
33941749 |
atcaagtatagaacgacctcgtgaaagttc |
33941720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 33913210 - 33912981
Alignment:
| Q |
1 |
aatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtctt |
100 |
Q |
| |
|
|||||||||||||| ||||||||| ||| || | ||||||||| |||||| ||| ||||||||||||| |||||||| || |||||||| |||||| |
|
|
| T |
33913210 |
aatttgttgatgatggccattgcttctatgccttcatcatctagtttatacaactccgcccacatatcaatgagagcagaaacgggaattctcaggtctt |
33913111 |
T |
|
| Q |
101 |
cgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaatcagtattaga |
200 |
Q |
| |
|
| || ||||| || | |||||||||||||||| || | | | ||||||||| |||||||| |||| |||| |||||||||||||||| |||||| |||| |
|
|
| T |
33913110 |
cagggaataatgcaaggtccatgaagcactccttgttaatagcattatcttccaaaacatccaagacctttcggaggcgagtaagtaattcagtactaga |
33913011 |
T |
|
| Q |
201 |
atcaagaatagaatgaccttgtgatagttc |
230 |
Q |
| |
|
|||||| |||||| ||||||| || ||||| |
|
|
| T |
33913010 |
atcaagtatagaacgaccttgagaaagttc |
33912981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 12134 - 11905
Alignment:
| Q |
1 |
aatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtctt |
100 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| |||||||||||| ||||| || |||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
12134 |
aatttgtttatgatttccattgcttctattccattgtcatctagttcatacaattcagcccacatattaattagagcagcaacaggaattctatggtctt |
12035 |
T |
|
| Q |
101 |
cgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaatcagtattaga |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| || |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12034 |
cgggaaataaggctaggtccatgaagcactccttgattatgagattatcttcgaaaacatcaaagatcttttggaggcgagtaagtaactcagtattaga |
11935 |
T |
|
| Q |
201 |
atcaagaatagaatgaccttgtgatagttc |
230 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |
|
|
| T |
11934 |
atcaagtatagaatgaccttgtgacagttc |
11905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 8278212 - 8278439
Alignment:
| Q |
1 |
aatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtctt |
100 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| ||| |
|
|
| T |
8278212 |
aatttattgatgatttccattgcttctattccgttgtcatctagtctattcagctctgcc--------aacgagagcagcgacatgaattctatgggctt |
8278303 |
T |
|
| Q |
101 |
cgggaaataaggctatgtccatgaagcactccatg-------attgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaatcag |
193 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | |
|
|
| T |
8278304 |
caggaaataaggctatgtccatgaagcacttcatgaatcatgattgtgggattatcttctaaaacatcgaatatcttttggaggcgagtaagtaattcgg |
8278403 |
T |
|
| Q |
194 |
tattagaatcaagaatagaatgaccttgtgatagttc |
230 |
Q |
| |
|
||||||||||||||| |||| ||||| |||| ||||| |
|
|
| T |
8278404 |
tattagaatcaagaacagaa-gacctcgtgacagttc |
8278439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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