View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10095_low_8 (Length: 242)
Name: NF10095_low_8
Description: NF10095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10095_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 3855319 - 3855529
Alignment:
| Q |
15 |
cagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttttgagttcgggcaaatgagtaaaacgtttatgaacatg |
114 |
Q |
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| T |
3855319 |
cagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttttaagtttgggcaaatgagtaagatatttatcaacatg |
3855418 |
T |
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| Q |
115 |
gtgtatagttaagaccccattcccattcaagttcaaaacaacaagaggtgaataagttagaatgccatgtggcaagcaaatgggggtagtggaagagtgc |
214 |
Q |
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| T |
3855419 |
gtatatcattaagaccccattcccattcaagttcaaaacaacaagaggtgaataagttagaatgggacctgggaagcaaatgggggtagtggaagagtgc |
3855518 |
T |
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| Q |
215 |
tgcaaaaaagt |
225 |
Q |
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||||||||||| |
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| T |
3855519 |
tgcaaaaaagt |
3855529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 4141304 - 4141105
Alignment:
| Q |
15 |
cagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttttgagttcgggcaaatgagtaaaacgtttatgaacatg |
114 |
Q |
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| T |
4141304 |
cagagagaatctgaataagatatttaagctttagaaaatgaacctttgtcatgtggagtttttcgaggttgggcagattagtataagattcataaacaca |
4141205 |
T |
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| Q |
115 |
gtgtatagttaagaccccattcccattcaagttcaaaacaacaagaggtgaataagttagaatgccatgtggcaagcaaatgggggtagtggaagagtgc |
214 |
Q |
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| T |
4141204 |
gtctattgttaacaccccattcccattcaagttcaaaacaacaagagttgaacaa---agaatgttatttggcaagtaaatcggggtagcggaagagtgc |
4141108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 1882058 - 1881932
Alignment:
| Q |
15 |
cagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttttgagttcgggcaaatgagtaaaacgtttatgaacatg |
114 |
Q |
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|||||||||||||||||||| ||| ||||||| ||||| ||||| |||| | ||||||||||||||| | |||||||| ||||| | |||||||||| |
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| T |
1882058 |
cagagagaatcttaataagaaattgaagctttagaaaatgaacccttgtgaagtggagttttttgaggttgggcaaattagtaagagagttatgaacatt |
1881959 |
T |
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| Q |
115 |
gtgtatagttaagaccccattcccatt |
141 |
Q |
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| T |
1881958 |
gtcaatagttaagaccccattcccatt |
1881932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 41541850 - 41541770
Alignment:
| Q |
17 |
gagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttttgagttcgggcaaatgagta |
97 |
Q |
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| T |
41541850 |
gagagaatcttaataagaaattgaagctttggaaaatgaacccttgtgaagtggagttttttgaggttgggcaaattagta |
41541770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 41541734 - 41541658
Alignment:
| Q |
130 |
cccattcccattcaagttcaaaacaacaagaggtgaataagttagaatgccatgtggcaagcaaatgggggtagtgg |
206 |
Q |
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| T |
41541734 |
cccattcccattcaaattcaaaacaacaagagttgaacaaattagaatcttctgagtcaagtaaatgggggtagtgg |
41541658 |
T |
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