View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10095_low_9 (Length: 240)
Name: NF10095_low_9
Description: NF10095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10095_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 11818861 - 11818694
Alignment:
| Q |
52 |
agcatatgtttatattatctatactcactcgctaccttttgttttaattaggtatggacgaataggtatctacaagacacacttattcgggagtccaagc |
151 |
Q |
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| T |
11818861 |
agcatatgtttatagtttctatactcactcgctagcttttgtttta----ggtatggacgaataggtatctacaagacacatttattcgggagtccaagc |
11818766 |
T |
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| Q |
152 |
atcatcgtttgtgaggctgacatgtgtaggcaagtgttgacaaatgatgagacctttaagattggttatcca |
223 |
Q |
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| T |
11818765 |
atcatcgtttgtgaggctgacatgtgtaggcaagtgttgacaaatgatgagacctttaagattggttatcca |
11818694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 11804863 - 11804703
Alignment:
| Q |
60 |
tttatattatctatactcactcgctaccttttgttttaattaggtatggacgaataggtatctacaagacacacttattcgggagtccaagcatcatcgt |
159 |
Q |
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| T |
11804863 |
tttatattttctatactcactcgttatctttggtttt---taggaatggacggactggtatctacaagacgcacttattcgggagtccaagcatcatcat |
11804767 |
T |
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| Q |
160 |
ttgtgaggctgacatgtgtaggcaagtgttgacaaatgatgagacctttaagattggttatcca |
223 |
Q |
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| T |
11804766 |
ttgtgaggctgacatgtgccggcgtgtcttgttagattatgagacgtttaagattggttatcca |
11804703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 223
Target Start/End: Complemental strand, 11827126 - 11827002
Alignment:
| Q |
99 |
ttaggtatggacgaataggtatctacaagacacacttattcgggagtccaagcatcatcgtttgtgaggctgacatgtgtaggcaagtgttgacaaatga |
198 |
Q |
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| T |
11827126 |
ttaggtatggaagaactggtatctacaagtcgcacttgtttgggagtccaagcatcatcatctgtgattctgatatgtgtaggcaaatcctaacaaatga |
11827027 |
T |
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| Q |
199 |
tgagacctttaagattggttatcca |
223 |
Q |
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| T |
11827026 |
tgagacttttaagattggttatcca |
11827002 |
T |
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