View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10096_low_1 (Length: 512)
Name: NF10096_low_1
Description: NF10096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10096_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 109 - 496
Target Start/End: Original strand, 23806160 - 23806551
Alignment:
| Q |
109 |
tcaattgagtcaaaaagtaaggatcagctttttaaaggatgaaattcattcactataaagcatcaagcatcatcataaagcaattaagtataatttctaa |
208 |
Q |
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| T |
23806160 |
tcaattgagtcaaaaagtaaggatcaactttttaaaggatgaaattcattcactataaagcatcaagcatcatcataaagcaattaagtataatttcaaa |
23806259 |
T |
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| Q |
209 |
caatccaagggaaagtgagtacttgattatggaaaacatgctaaaaaggatgatatta--accaccatttggactttataatttataaa--ttattaaga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |
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| T |
23806260 |
caatccaagggaaagtgagtacttgattatggaaaacatgctaaaaaggatgatattataaccaccatttggactttataatttatatacattattaaga |
23806359 |
T |
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| Q |
305 |
tctgcttttataaaaatatccacacatgctccacaaaaagcacttcactgattatctcacgtttggcttacaacttttcaccaattgttcccatagtgat |
404 |
Q |
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| T |
23806360 |
tctgcttttataaaaatatccacacatgctccacaaaaagcacttcactgattatctcacgtttggcttacaacttttcaccaattgttcccatagtgat |
23806459 |
T |
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| Q |
405 |
ggtccataagctctctttattgcctttagatgggactttgtggtggaactgtcattgtataaaggaatccataacattatctatgtcaagaa |
496 |
Q |
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| T |
23806460 |
ggtccataagctctctttattgcctttagatgggactttgtggtggaactgtcattgtacagaggaatccataacattatctatgtcaagaa |
23806551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 23805722 - 23805832
Alignment:
| Q |
1 |
ctgatattttttcttttctaactttgttggatggctttgtatcttttgctctcttctcttgcacatcttatgctaggtgggttgagagcagtttggttat |
100 |
Q |
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| T |
23805722 |
ctgatattttttcttttctaactttgttggatggctttgtatcttttgctctcttctcttgcacaccttgtgctaggtgggttgagagcagtttagttat |
23805821 |
T |
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| Q |
101 |
aatatatgtca |
111 |
Q |
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||||||||||| |
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| T |
23805822 |
aatatatgtca |
23805832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 28838932 - 28838874
Alignment:
| Q |
7 |
ttttttcttttctaactttgttggatggctttgtatcttttgctctcttctcttgcaca |
65 |
Q |
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| T |
28838932 |
ttttttattttctagctttgttggatgactctgtatattttgctatcttctctagcaca |
28838874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 10721839 - 10721893
Alignment:
| Q |
5 |
tattttttcttttctaactttgttggatggctttgtatcttttgctctcttctct |
59 |
Q |
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| T |
10721839 |
tattttttctattctaactttgttggatgactttgtatcttttgttctcttctct |
10721893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 43119163 - 43119067
Alignment:
| Q |
7 |
ttttttcttttctaactttgttggatggctttgtatcttttgctctcttctcttgcacatcttatgctaggtgggttgagagcagtttggttataatata |
106 |
Q |
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| T |
43119163 |
ttttttctcttctagctttgttgaatgactttatatcttttgctctcttttctggcacaccttgt----gttgggttgagagtagtttggttataatata |
43119068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 18418006 - 18418058
Alignment:
| Q |
5 |
tattttttcttttctaactttgttggatggctttgtatcttttgctctcttct |
57 |
Q |
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|||||||||| ||||| |||||||||||| || | |||||||||||||||||| |
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| T |
18418006 |
tattttttctcttctagctttgttggatgactctatatcttttgctctcttct |
18418058 |
T |
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