View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10096_low_11 (Length: 249)

Name: NF10096_low_11
Description: NF10096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10096_low_11
NF10096_low_11
[»] chr4 (8 HSPs)
chr4 (1-232)||(8979049-8979280)
chr4 (14-236)||(9000326-9000548)
chr4 (15-235)||(8954727-8954947)
chr4 (17-229)||(8966423-8966635)
chr4 (15-241)||(9030577-9030803)
chr4 (22-241)||(8900733-8900952)
chr4 (22-241)||(8914638-8914857)
chr4 (27-241)||(8929560-8929774)
[»] chr5 (2 HSPs)
chr5 (22-241)||(20074192-20074411)
chr5 (22-230)||(9400441-9400649)
[»] scaffold0287 (1 HSPs)
scaffold0287 (51-220)||(15562-15731)
[»] chr7 (2 HSPs)
chr7 (51-220)||(3630354-3630523)
chr7 (144-220)||(3619978-3620054)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 8979049 - 8979280
Alignment:
Q  1 ttaactgcaaagtttctttgtagaatatgcttgtagctgcaacagatactacttcagccacatcagtttgggctatgactgccctaataaaaaacccaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8979049 ttaactgcaaagtttctttgtagaatatgcttgtagctgcaacagatactacatcagccacatcagtttgggctatgactgccctaataaaaaacccaag 8979148  T
Q  101 agtaatgagaaaagtgcaagaggaaattaggaacttgggaggtaaaaaagattttttagatgaagatgatattcaaaattctctatatttgaaggcagtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979149 agtaatgagaaaagtgcaagaggaaattaggaacttgggaggtaaaaaagattttttagatgaagatgatattcaaaattctctatatttgaaggcagtg 8979248  T
Q  201 ataaaaaagacattaagattgtacctaccagc 232  Q
    |||||| |||||||||||||||||||||||||    
T  8979249 ataaaagagacattaagattgtacctaccagc 8979280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 9000548 - 9000326
Alignment:
Q  14 ttctttgtagaatatgcttgtagctgcaacagatactacttcagccacatcagtttgggctatgactgccctaataaaaaacccaagagtaatgagaaaa 113  Q
    |||||||||| ||||  ||||||||| ||||||||| ||  ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||    
T  9000548 ttctttgtaggatattattgtagctggaacagataccacagcagccacatcagtttgggctatgactgccttaatgaaaaacccaagagtaatgaggaaa 9000449  T
Q  114 gtgcaagaggaaattaggaacttgggaggtaaaaaagattttttagatgaagatgatattcaaaattctctatatttgaaggcagtgataaaaaagacat 213  Q
    || ||||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||  |  ||||||||||||||||| ||| ||||      
T  9000448 gtacaagatgaaattagaaatttgggaggtgaaaaagattttttagatgaagatgatattcaaaatttaccttatttgaaggcagtgattaaagagacgc 9000349  T
Q  214 taagattgtacctaccagcccct 236  Q
    |||||||| ||||||||||||||    
T  9000348 taagattgcacctaccagcccct 9000326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 8954727 - 8954947
Alignment:
Q  15 tctttgtagaatatgcttgtagctgcaacagatactacttcagccacatcagtttgggctatgactgccctaataaaaaacccaagagtaatgagaaaag 114  Q
    |||||| || ||||||||||||||||||| ||||| || |||||  |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||    
T  8954727 tctttgcaggatatgcttgtagctgcaaccgataccacatcagcagcatcagtttgggctatgactgctctaataaaaaaccctagagtaatgagtaaag 8954826  T
Q  115 tgcaagaggaaattaggaacttgggaggtaaaaaagattttttagatgaagatgatattcaaaattctctatatttgaaggcagtgataaaaaagacatt 214  Q
    |  |||| ||||| || || ||||||| |||||||||||||||| ||||||||||||||||||||| ||  |||||||||||  |  | ||| ||||| |    
T  8954827 taaaagaagaaataagaaatttgggagttaaaaaagattttttatatgaagatgatattcaaaattgtccttatttgaaggctatagttaaagagacact 8954926  T
Q  215 aagattgtacctaccagcccc 235  Q
    ||||||  |||||||||||||    
T  8954927 aagattacacctaccagcccc 8954947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 8966635 - 8966423
Alignment:
Q  17 tttgtagaatatgcttgtagctgcaacagatactacttcagccacatcagtttgggctatgactgccctaataaaaaacccaagagtaatgagaaaagtg 116  Q
    ||||||| | |||||||||||||||||||| || ||  |||||||||||||||||||||| ||  |||| ||||||||||||||||||||||  |||||     
T  8966635 tttgtaggacatgcttgtagctgcaacagacaccacagcagccacatcagtttgggctataacctccctgataaaaaacccaagagtaatgaagaaagta 8966536  T
Q  117 caagaggaaattaggaacttgggaggtaaaaaagattttttagatgaagatgatattcaaaattctctatatttgaaggcagtgataaaaaagacattaa 216  Q
    ||||| |||||||| ||||||||| |||||||||| ||  |||| ||| |||||||||||||||  | |||||| ||||||||||||||| |||| || |    
T  8966535 caagaagaaattagaaacttgggaagtaaaaaagaattcatagacgaaaatgatattcaaaatttcccatatttaaaggcagtgataaaagagacgttga 8966436  T
Q  217 gattgtacctacc 229  Q
    ||||| |||||||    
T  8966435 gattgcacctacc 8966423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 9030577 - 9030803
Alignment:
Q  15 tctttgtagaatatgcttgtagctgcaacagatactacttcagccacatcagtttgggctatgactgccctaataaaaaacccaagagtaatgagaaaag 114  Q
    ||||||||| ||| | ||||||| ||||||||||| || |||||| ||||||||||||||||||| |||||||| ||||||||||||||| ||   ||||    
T  9030577 tctttgtaggatacgattgtagccgcaacagataccacatcagccgcatcagtttgggctatgaccgccctaatgaaaaacccaagagtattggataaag 9030676  T
Q  115 tgcaagaggaaattaggaacttgggaggtaaaaaagattttttagatgaagatgatattcaaaattctctatatttgaaggcagtgataaaaaagacatt 214  Q
    | ||||| ||||| || ||||||||||||  |||||||| ||||||||||| |||| |||||||||  |  |||||||| |||||||| ||| |||| ||    
T  9030677 tacaagaagaaatcagaaacttgggaggtgcaaaagattatttagatgaaggtgatcttcaaaatttaccttatttgaatgcagtgattaaagagacgtt 9030776  T
Q  215 aagattgtacctaccagcccctttgct 241  Q
    ||||||| | ||||||||||| |||||    
T  9030777 aagattgcatctaccagccccattgct 9030803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 8900952 - 8900733
Alignment:
Q  22 agaatatgcttgtagctgcaacagatactacttcagccacatcagtttgggctatgactgccctaataaaaaacccaagagtaatgagaaaagtgcaaga 121  Q
    |||| ||||||||||||||||| ||||| || || ||||||  ||||||||||||||||||| |||||||||| |||||||||||||  ||||||||| |    
T  8900952 agaacatgcttgtagctgcaacggataccacatctgccacaatagtttgggctatgactgccttaataaaaaatccaagagtaatgaagaaagtgcaaca 8900853  T
Q  122 ggaaattaggaacttgggaggtaaaaaagattttttagatgaagatgatattcaaaa-ttctctatatttgaaggcagtgataaaaaagacattaagatt 220  Q
     || |||||||| |   ||| ||||||||| ||| |||||||||||||||| ||||| |||||  || |||||||||||||||||| ||||||| |||||    
T  8900852 agagattaggaattcaagagttaaaaaagaatttatagatgaagatgatatacaaaatttctc-ctacttgaaggcagtgataaaagagacattgagatt 8900754  T
Q  221 gtacctaccagcccctttgct 241  Q
    ||||||||||| ||| |||||    
T  8900753 gtacctaccaggcccattgct 8900733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 8914857 - 8914638
Alignment:
Q  22 agaatatgcttgtagctgcaacagatactacttcagccacatcagtttgggctatgactgccctaataaaaaacccaagagtaatgagaaaagtgcaaga 121  Q
    |||||||||||||||| ||||||| ||| || || |||||| |||||||||||||||||||| |||||||||| |||||||||||||  ||||| ||| |    
T  8914857 agaatatgcttgtagcggcaacaggtaccacgtctgccacagcagtttgggctatgactgccttaataaaaaatccaagagtaatgaagaaagtacaaca 8914758  T
Q  122 ggaaattaggaacttgggaggtaaaaaagattttttagatgaagatgatattcaaaattctctatatttgaaggcagtgataaaaaagacattaagattg 221  Q
     || |||||||| |   ||| ||||||||| ||| |||||||||||||||| | |||||     || || ||||||||||||||| ||||||| ||||||    
T  8914757 agagattaggaattcaagagttaaaaaagaatttatagatgaagatgatatacgaaatttgtcctacttaaaggcagtgataaaagagacattgagattg 8914658  T
Q  222 tacctaccagcccctttgct 241  Q
    ||||| |||||||| |||||    
T  8914657 tacctgccagccccattgct 8914638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 8929774 - 8929560
Alignment:
Q  27 atgcttgtagctgcaacagatactacttcagccacatcagtttgggctatgactgccctaataaaaaacccaagagtaatgagaaaagtgcaagaggaaa 126  Q
    ||||||||||| ||||||||||| || || |||||   ||| ||||||||||||||||||||||||||||||||||||||||  ||||| ||||| || |    
T  8929774 atgcttgtagccgcaacagataccacgtctgccacgatagtgtgggctatgactgccctaataaaaaacccaagagtaatgaagaaagtacaagaagaga 8929675  T
Q  127 ttaggaacttgggaggtaaaaaagattttttagatgaagatgatattcaaaattctctatatttgaaggcagtgataaaaaagacattaagattgtacct 226  Q
    |||||   |   ||| |||||| |||||| |||| | ||||||| | |||||||   | ||||||||||| ||||||||| ||||||| |||||||||||    
T  8929674 ttaggggatcaagagttaaaaaggattttctagacggagatgatctacaaaatttcgtctatttgaaggcggtgataaaagagacattgagattgtacct 8929575  T
Q  227 accagcccctttgct 241  Q
    |||||| || |||||    
T  8929574 accagctccattgct 8929560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 20074411 - 20074192
Alignment:
Q  22 agaatatgcttgtagctgcaacagatactacttcagccacatcagtttgggctatgactgccctaataaaaaacccaagagtaatgagaaaagtgcaaga 121  Q
    |||| |||||||| |||||||||||||| || ||||||||| |||| ||||||||||||||  |||||||||| |||||||||||||  ||||| ||| |    
T  20074411 agaacatgcttgttgctgcaacagataccacatcagccacaacagtatgggctatgactgcattaataaaaaatccaagagtaatgaagaaagtacaaca 20074312  T
Q  122 ggaaattaggaacttgggaggtaaaaaagattttttagatgaagatgatattcaaaa-ttctctatatttgaaggcagtgataaaaaagacattaagatt 220  Q
     || ||||| || |    || ||||||||| ||| |||||||||||||||| ||||| |||||  || |||||||||||||||||| ||||| | |||||    
T  20074311 agagattagaaattcaaaagttaaaaaagaatttatagatgaagatgatatacaaaatttctc-ctacttgaaggcagtgataaaagagacactgagatt 20074213  T
Q  221 gtacctaccagcccctttgct 241  Q
    |||| | |||||||| |||||    
T  20074212 gtacttgccagccccattgct 20074192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 9400649 - 9400441
Alignment:
Q  22 agaatatgcttgtagctgcaacagatactacttcagccacatcagtttgggctatgactgccctaataaaaaacccaagagtaatgagaaaagtgcaaga 121  Q
    |||||||||||||||||||||||||||| || ||||| |||| ||||||||| ||||||| ||||||||| |||||   ||||||||  ||||| ||| |    
T  9400649 agaatatgcttgtagctgcaacagatacaacatcagctacattagtttgggcaatgactgtcctaataaagaaccctgcagtaatgaagaaagtacaaca 9400550  T
Q  122 ggaaattaggaacttgggaggtaaaaaagattttttagatgaagatgatattcaaaa-ttctctatatttgaaggcagtgataaaaaagacattaagatt 220  Q
     || |||||||  |   ||| ||||||||| |||||||||||||||||||| ||||| |||||  || ||||||||||| |||||| ||||||| |||||    
T  9400549 agagattaggagttcaagagttaaaaaagactttttagatgaagatgatatacaaaatttctc-ctacttgaaggcagtcataaaagagacattgagatt 9400451  T
Q  221 gtacctacca 230  Q
     | |||||||    
T  9400450 attcctacca 9400441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 220
Target Start/End: Original strand, 15562 - 15731
Alignment:
Q  51 acttcagccacatcagtttgggctatgactgccctaataaaaaacccaagagtaatgagaaaagtgcaagaggaaattaggaacttgggaggtaaaaaag 150  Q
    |||||||||||||| |||||||| |||||||   |||| || || ||||||| |||||  ||||  ||||| |||||||| ||| |  | || |||||||    
T  15562 acttcagccacatcggtttgggcgatgactggattaatgaagaatccaagagcaatgaagaaagctcaagaagaaattagaaacatatgtggcaaaaaag 15661  T
Q  151 attttttagatgaagatgatattcaaaattctctatatttgaaggcagtgataaaaaagacattaagatt 220  Q
    | ||  ||||||||||||||||||||||   | ||||| | ||||| ||||||||| | |||||||||||    
T  15662 agttcatagatgaagatgatattcaaaagcttgtatatcttaaggctgtgataaaagaaacattaagatt 15731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 3630523 - 3630354
Alignment:
Q  51 acttcagccacatcagtttgggctatgactgccctaataaaaaacccaagagtaatgagaaaagtgcaagaggaaattaggaacttgggaggtaaaaaag 150  Q
    |||||||||||||| |||||||| |||||||   |||| || || ||||||| |||||  ||||  ||||| |||||||| ||| |  | || |||||||    
T  3630523 acttcagccacatcggtttgggcgatgactggattaatgaagaatccaagagcaatgaagaaagctcaagaagaaattagaaacatatgtggcaaaaaag 3630424  T
Q  151 attttttagatgaagatgatattcaaaattctctatatttgaaggcagtgataaaaaagacattaagatt 220  Q
    | ||  ||||||||||||||||||||||   | ||||| | ||||| ||||||||| | |||||||||||    
T  3630423 agttcatagatgaagatgatattcaaaagcttgtatatcttaaggctgtgataaaagaaacattaagatt 3630354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 3620054 - 3619978
Alignment:
Q  144 aaaaaagattttttagatgaagatgatattcaaaattctctatatttgaaggcagtgataaaaaagacattaagatt 220  Q
    |||||||| ||  |||||||||||||||||||||| | | ||||||| ||||| ||||||||| |||||||||||||    
T  3620054 aaaaaagagttcatagatgaagatgatattcaaaagtttgtatattttaaggctgtgataaaagagacattaagatt 3619978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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