View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10096_low_12 (Length: 249)
Name: NF10096_low_12
Description: NF10096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10096_low_12 |
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| [»] scaffold1234 (1 HSPs) |
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Alignment Details
Target: scaffold1234 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1234
Description:
Target: scaffold1234; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 342 - 240
Alignment:
| Q |
50 |
ttgaataaattaaatggtatcaagtaaattataccaagaccttcaacaaaagaaattatatactgccaaataaattatatgtcatcaaacctgcacatag |
149 |
Q |
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||||| |||||||||||||||| ||||||||||| | |||| ||||||||||||||| || ||||||||| ||||||||||||||| || |||||| || |
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| T |
342 |
ttgaagaaattaaatggtatcatgtaaattatacatatacctgcaacaaaagaaattacatgctgccaaatgaattatatgtcatcatacatgcacaaag |
243 |
T |
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| Q |
150 |
aga |
152 |
Q |
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||| |
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| T |
242 |
aga |
240 |
T |
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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 5770252 - 5770354
Alignment:
| Q |
50 |
ttgaataaattaaatggtatcaagtaaattataccaagaccttcaacaaaagaaattatatactgccaaataaattatatgtcatcaaacctgcacatag |
149 |
Q |
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| T |
5770252 |
ttgaagaaattaaatggtatcatgtaaattatacatatacctgcaacaaaagaaattacatgctgccaaatgaattatatgtcatcatacatgcacaaag |
5770351 |
T |
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| Q |
150 |
aga |
152 |
Q |
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||| |
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| T |
5770352 |
aga |
5770354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 33867797 - 33867695
Alignment:
| Q |
50 |
ttgaataaattaaatggtatcaagtaaattataccaagaccttcaacaaaagaaattatatactgccaaataaattatatgtcatcaaacctgcacatag |
149 |
Q |
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||||| |||||||||||||||| ||||||||||| | |||| ||||||||||||||| || ||||||||| ||||||||||||||| || |||||| || |
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| T |
33867797 |
ttgaagaaattaaatggtatcatgtaaattatacatatacctgcaacaaaagaaattacatgctgccaaatgaattatatgtcatcatacatgcacaaag |
33867698 |
T |
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| Q |
150 |
aga |
152 |
Q |
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||| |
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| T |
33867697 |
aga |
33867695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 26497241 - 26497194
Alignment:
| Q |
188 |
caccagccaatttatcctcttgcagcaatatcttgaagaatattatat |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26497241 |
caccagccaatttatcctcttgcagcaatatcttgaagaatattatat |
26497194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 31449371 - 31449324
Alignment:
| Q |
57 |
aattaaatggtatcaagtaaattataccaagaccttcaacaaaagaaa |
104 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31449371 |
aattaaatggtatcaagtaaattaaaccaagaccttcaacaaaagaaa |
31449324 |
T |
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